EY756285

Overview
NameEY756285
Unique NameEY756285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.673e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DHI DPVANNAWAYATNFVPGK
Sbjct:  233 VTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  242 VTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  246 VTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  246 VTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DHIADPV NNAWAYATNFVPGK
Sbjct:  233 VTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  233 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  235 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  235 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  233 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  229 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
The following BLAST results are available for this feature:
BLAST of EY756285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CB24_SOLLC6.673e-1293.94Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2B_PINSY1.138e-1190.91Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY1.138e-1190.91Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY1.138e-1190.91Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_MAIZE1.138e-1190.91Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE1.942e-1187.88Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_TOBAC1.942e-1187.88Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL1.942e-1187.88Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC1.942e-1187.88Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ1.942e-1187.88Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-G12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756285 ID=EY756285; Name=EY756285; organism=Citrus sinensis; type=EST; length=288bp
CCACGCGTCCGGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCAC
ATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGT
TCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTA
ACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGAC
TTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCT
TTTATTTCCNNAAAAAAAAAAAAAAAAAAAAAAAAAAA
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