EY756285

Overview
NameEY756285
Unique NameEY756285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  174 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  233 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  223 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.312e-11
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DH+ DPV NNAWAYATNFVPGK
Sbjct:  232 VTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.312e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  235 VTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.312e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  235 VTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.312e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:  235 VTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.312e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  235 VTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.312e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  235 VTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.325e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:   84 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
The following BLAST results are available for this feature:
BLAST of EY756285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CB22_CUCSA1.942e-1187.88Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ1.942e-1187.88Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA1.942e-1187.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE3.312e-1187.88Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC3.312e-1187.88Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.312e-1187.88Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB27_TOBAC3.312e-1184.85Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_ARATH3.312e-1187.88Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.312e-1187.88Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2D_SOLLC4.325e-1184.85Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-G12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756285 ID=EY756285; Name=EY756285; organism=Citrus sinensis; type=EST; length=288bp
CCACGCGTCCGGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCAC
ATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGT
TCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTA
ACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGAC
TTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCT
TTTATTTCCNNAAAAAAAAAAAAAAAAAAAAAAAAAAA
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