EY756285

Overview
NameEY756285
Unique NameEY756285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  233 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  233 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  234 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DH+ADP  NNAWAYATNF PGK
Sbjct:  233 VTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  232 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  232 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+A+PV NNAWAYATNFVPGK
Sbjct:  213 VTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  234 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:   92 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.649e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  234 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
The following BLAST results are available for this feature:
BLAST of EY756285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CB2B_SOLLC5.649e-1184.85Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC5.649e-1184.85Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_PETSP5.649e-1184.85Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_POLMU5.649e-1184.85Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_APIGR5.649e-1184.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU5.649e-1184.85Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN5.649e-1184.85Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL5.649e-1184.85Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA5.649e-1184.85Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PETSP5.649e-1184.85Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-G12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756285 ID=EY756285; Name=EY756285; organism=Citrus sinensis; type=EST; length=288bp
CCACGCGTCCGGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCAC
ATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGT
TCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTA
ACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGAC
TTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCT
TTTATTTCCNNAAAAAAAAAAAAAAAAAAAAAAAAAAA
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