EY756279

Overview
NameEY756279
Unique NameEY756279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756279_ssr103 microsatellite EY756279_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:336..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.560e-32
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 3
Query:   21 PKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            P L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+ AGI DV+T + G+T++  NF KAT++ L
Sbjct:   46 PDLEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.560e-32
Identity = 75/162 (46.30%), Postives = 103/162 (63.58%), Query Frame = 3
Query:   21 PKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 500
            P+L+DEV+ I  VQ+ T +G+R +F+A V+VG+ DG VGLG     +V  AIR AI  AK+++  ++RG   W    G PHTVP +V GK GSVTV + PAPRG G+ A    +KVL+ AG+ DV+T + G T+T  NF KAT+  L+ T     P  + ET
Sbjct:   48 PELEDEVLDINMVQRMTDSGRRVKFRATVIVGNGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAPRGLGLAAGGTARKVLEKAGVKDVWTRTEGQTRTTLNFAKATYNALMNTGTVRRPIVFDET 209          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.560e-32
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 3
Query:   21 PKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            P L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+ AGI DV+T + G+T++  NF KAT++ L
Sbjct:   46 PDLEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.568e-32
Identity = 75/159 (47.17%), Postives = 99/159 (62.26%), Query Frame = 3
Query:   21 PKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 491
            P LK E + +  VQK T AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVRRG   W  + G PH++P  V GK GSV V + PAP+G G+VA    K VL+ AGI DV+T + G TKT  NF KA    L  TY F+ P  W
Sbjct:   53 PDLKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.568e-32
Identity = 70/152 (46.05%), Postives = 101/152 (66.45%), Query Frame = 3
Query:    6 VRAYFPKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + A  P L++EV+ +  VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I VRRG   WG   GR HTVP KV+GK GSV V ++PAP G G+    V K +++ AGIDDV++ +RG T+T  NF +ATF+ L
Sbjct:   44 IDALLPDLEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFARATFDAL 195          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.568e-32
Identity = 75/161 (46.58%), Postives = 103/161 (63.98%), Query Frame = 3
Query:   21 PKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRE 497
            P L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL +  + RG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+ AGI DV+T + G+T++  NF KATF+ L +      P + +E
Sbjct:   46 PDLEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATFDALNQVNVMRLPVYCKE 206          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.568e-32
Identity = 77/165 (46.67%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   21 PKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFV 509
            P L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I V RG   W    GRPHTV  K TGK GSV V ++PAPRG G+      + VL+ AGIDDV+T S G T+T  NF KATF  L +T     P   RE R V
Sbjct:   46 PGLDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKATFNALRETSEARVPQHAREEREV 210          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.461e-31
Identity = 73/152 (48.03%), Postives = 100/152 (65.79%), Query Frame = 3
Query:    6 VRAYFPKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            V A  P L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D +T + G T+T  NF +ATF+ L
Sbjct:   54 VDALLPDLEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METMP (30S ribosomal protein S5P OS=Methanococcus maripaludis GN=rps5p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.909e-31
Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 3
Query:    6 VRAYFPKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            V A  P L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T + G T+T  NF +ATF+ L
Sbjct:   50 VDALLPDLEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTYNFAEATFDAL 201          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_METM7 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps5p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.909e-31
Identity = 73/152 (48.03%), Postives = 100/152 (65.79%), Query Frame = 3
Query:    6 VRAYFPKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            V A  P L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D +T + G T+T  NF +ATF+ L
Sbjct:   54 VDALLPDLEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRIGCGSWECGCGYPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
The following BLAST results are available for this feature:
BLAST of EY756279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
RS5_METMA6.560e-3249.6630S ribosomal protein S5P OS=Methanosarcina mazei ... [more]
RS5_METBU6.560e-3246.3030S ribosomal protein S5P OS=Methanococcoides burt... [more]
RS5_METAC6.560e-3249.6630S ribosomal protein S5P OS=Methanosarcina acetiv... [more]
RS5_STAMF8.568e-3247.1730S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_METTH8.568e-3246.0530S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_METBF8.568e-3246.5830S ribosomal protein S5P OS=Methanosarcina barker... [more]
RS5_HALSA8.568e-3246.6730S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_METM61.461e-3148.0330S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METMP1.909e-3147.3730S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM71.909e-3148.0330S ribosomal protein S5P OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-F09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756279 ID=EY756279; Name=EY756279; organism=Citrus sinensis; type=EST; length=816bp
CCCGCGTCCGCGCTTATTTTCCCAAATTGAAGGACGAGGTCATGAAGATC
ATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGC
CTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGT
GCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAG
CTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAG
GCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCG
TGAGGATGGTTCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTT
CCAAAGAAGGTGCTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTC
TCGTGGGTCGACCAAGACTCTTGGAAACTTTGTCAAGGCAACCTTTGAGT
GTTTGTTGAAGACATATGGCTTCCTTACACCTGATTTCTGGAGGGAGACT
CGTTTTGTGAAATCTCCATACCAAGAGTACACAGATCTTTTGACGCCAAA
GCCCATCAGCAAGGCAGTCATCACAGAAGTTGATCAAGTTGAACCTTAAG
CTACTTAAGGCTGCATGGAGAGGAGAGCATTAGAATGAAAGGCATTTTGG
TTGACTTTATAGTATAGCTTTGTTTGATACAGACTTTTCTGTTTTTCATT
TCTGCAGGACTAGTATGTTGCTATTTGGGGACACAATTGTTTGCTTTAAA
GTTTTGCAATCAGAGTTTTCTTGAATGGATGTTTATTTATCAAAAAAGAA
AAAAAAAAAAAAAAAA
back to top