EY756279

Overview
NameEY756279
Unique NameEY756279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756279_ssr103 microsatellite EY756279_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:336..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+ATF+ L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_BACST (30S ribosomal protein S5 OS=Bacillus stearothermophilus GN=rpsE PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+ATF+ L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_UREU1 (30S ribosomal protein S5 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.785e-17
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 3
Query:   30 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 482
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++AT   LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_UREPA (30S ribosomal protein S5 OS=Ureaplasma parvum GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.785e-17
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 3
Query:   30 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 482
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++AT   LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_UREP2 (30S ribosomal protein S5 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.785e-17
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 3
Query:   30 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 482
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++AT   LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+ATF+ L
Sbjct:   10 ELEERVVAINRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLMEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_FLAPJ (30S ribosomal protein S5 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 461
            +LKD ++ +  V K T+ G+   F A VVVGD +G VG G+  SK+V+ AI  A+  AK +++ +             +VP +  GK G   V ++PA  G G++A    + VL+  GI DV + S+GS+    N VKATF+ LL+
Sbjct:   17 ELKDRLVSVNRVTKVTKGGRAFGFSAIVVVGDENGVVGHGLGKSKDVSEAIAKAVEDAKKNLVKIPLS--------GKSVPHEQKGKFGGARVNLMPASHGTGVIAGGAVRSVLESVGIHDVLSKSQGSSNP-HNVVKATFDALLQ 153          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   27 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VKAT   L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   27 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VKAT   L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   27 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A    + VL+ AG+ DV   S GS     N VKAT   L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
The following BLAST results are available for this feature:
BLAST of EY756279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
RS5_GEOKA5.961e-1738.8930S ribosomal protein S5 OS=Geobacillus kaustophil... [more]
RS5_BACST5.961e-1738.8930S ribosomal protein S5 OS=Bacillus stearothermop... [more]
RS5_UREU17.785e-1736.4230S ribosomal protein S5 OS=Ureaplasma urealyticum... [more]
RS5_UREPA7.785e-1736.4230S ribosomal protein S5 OS=Ureaplasma parvum GN=r... [more]
RS5_UREP27.785e-1736.4230S ribosomal protein S5 OS=Ureaplasma parvum sero... [more]
RS5_GEOTN1.017e-1638.8930S ribosomal protein S5 OS=Geobacillus thermodeni... [more]
RS5_FLAPJ1.734e-1636.9930S ribosomal protein S5 OS=Flavobacterium psychro... [more]
RS5_CLOPS2.265e-1639.8630S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOPE2.265e-1639.8630S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOP12.265e-1639.8630S ribosomal protein S5 OS=Clostridium perfringen... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-F09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756279 ID=EY756279; Name=EY756279; organism=Citrus sinensis; type=EST; length=816bp
CCCGCGTCCGCGCTTATTTTCCCAAATTGAAGGACGAGGTCATGAAGATC
ATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGC
CTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGT
GCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAG
CTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAG
GCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCG
TGAGGATGGTTCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTT
CCAAAGAAGGTGCTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTC
TCGTGGGTCGACCAAGACTCTTGGAAACTTTGTCAAGGCAACCTTTGAGT
GTTTGTTGAAGACATATGGCTTCCTTACACCTGATTTCTGGAGGGAGACT
CGTTTTGTGAAATCTCCATACCAAGAGTACACAGATCTTTTGACGCCAAA
GCCCATCAGCAAGGCAGTCATCACAGAAGTTGATCAAGTTGAACCTTAAG
CTACTTAAGGCTGCATGGAGAGGAGAGCATTAGAATGAAAGGCATTTTGG
TTGACTTTATAGTATAGCTTTGTTTGATACAGACTTTTCTGTTTTTCATT
TCTGCAGGACTAGTATGTTGCTATTTGGGGACACAATTGTTTGCTTTAAA
GTTTTGCAATCAGAGTTTTCTTGAATGGATGTTTATTTATCAAAAAAGAA
AAAAAAAAAAAAAAAA
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