EY756279

Overview
NameEY756279
Unique NameEY756279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756279_ssr103 microsatellite EY756279_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:336..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_FUSNN (30S ribosomal protein S5 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.046e-16
Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 3
Query:   30 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            +++++KI  V K T+ G+   F     VGD +G +GLG+  +  V  AIR AI  AK +++ +          + +T+P ++ GK G+ T+ M PA  G G++A    +++L+  G+ D+ T  +GS +   N  +AT E L
Sbjct:   10 QEKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIVKISL--------KNNTIPHEIAGKWGATTLWMAPAYEGTGVIAGSASREILELVGVHDILTKIKGS-RNKHNVARATVEAL 142          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_ANOFW (30S ribosomal protein S5 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.046e-16
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLITV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAW (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MW2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAT (30S ribosomal protein S5 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAS (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MSSA476) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAR (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MRSA252) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAN (30S ribosomal protein S5 OS=Staphylococcus aureus (strain N315) GN=rpsE PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAM (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsE PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAE (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Newman) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
BLAST of EY756279 vs. ExPASy Swiss-Prot
Match: RS5_STAAC (30S ribosomal protein S5 OS=Staphylococcus aureus (strain COL) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   24 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 455
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+AT + L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATIDGL 144          
The following BLAST results are available for this feature:
BLAST of EY756279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
RS5_FUSNN5.046e-1631.6930S ribosomal protein S5 OS=Fusobacterium nucleatu... [more]
RS5_ANOFW5.046e-1638.1930S ribosomal protein S5 OS=Anoxybacillus flavithe... [more]
RS5_STAAW6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAT6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAS6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAR6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAN6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAM6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAE6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAC6.590e-1637.5030S ribosomal protein S5 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-F09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756279 ID=EY756279; Name=EY756279; organism=Citrus sinensis; type=EST; length=816bp
CCCGCGTCCGCGCTTATTTTCCCAAATTGAAGGACGAGGTCATGAAGATC
ATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGC
CTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGT
GCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAG
CTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAG
GCCACACACCGTGCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCG
TGAGGATGGTTCCGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTT
CCAAAGAAGGTGCTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTC
TCGTGGGTCGACCAAGACTCTTGGAAACTTTGTCAAGGCAACCTTTGAGT
GTTTGTTGAAGACATATGGCTTCCTTACACCTGATTTCTGGAGGGAGACT
CGTTTTGTGAAATCTCCATACCAAGAGTACACAGATCTTTTGACGCCAAA
GCCCATCAGCAAGGCAGTCATCACAGAAGTTGATCAAGTTGAACCTTAAG
CTACTTAAGGCTGCATGGAGAGGAGAGCATTAGAATGAAAGGCATTTTGG
TTGACTTTATAGTATAGCTTTGTTTGATACAGACTTTTCTGTTTTTCATT
TCTGCAGGACTAGTATGTTGCTATTTGGGGACACAATTGTTTGCTTTAAA
GTTTTGCAATCAGAGTTTTCTTGAATGGATGTTTATTTATCAAAAAAGAA
AAAAAAAAAAAAAAAA
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