EY756262

Overview
NameEY756262
Unique NameEY756262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1046
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 8.814e-78
Identity = 150/203 (73.89%), Postives = 167/203 (82.27%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA+STMALSS+ F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ+ILAIWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-GGPLGEVVDPLYP-GGSFDPLG 198          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 1.151e-77
Identity = 147/201 (73.13%), Postives = 165/201 (82.09%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA STMALSS +F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G+  D   P   + +PLG
Sbjct:    1 MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYP-GGSFDPLG 200          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 3.349e-77
Identity = 150/203 (73.89%), Postives = 166/203 (81.77%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA+STMALSS+ F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ+ILAIWA QV LMGA+ G +    G  G+++DP  P     +PLG
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVA-GGPLGEVVDPLYP-GGTFDPLG 198          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.837e-76
Identity = 146/200 (73.00%), Postives = 161/200 (80.50%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TMALSSS F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 MAAATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-GGPLGEVVDPLYP-GGSFDPLG 197          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.077e-75
Identity = 146/202 (72.28%), Postives = 165/202 (81.68%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TM+LSSS F GKAV   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLG P+L+HAQ++LAIWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 MAATTMSLSSSSFAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIA-GGPLGEIVDPLYP-GGSFDPLG 199          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 3.135e-75
Identity = 146/202 (72.28%), Postives = 162/202 (80.20%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA STMA+SS+   G  + +   G      GRI+MRKT  K    +SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ+ILAIWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 MAASTMAISSTAMAGTPIKVGSFGE-----GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-GGPLGEVVDPLYP-GGSFDPLG 195          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 5.347e-75
Identity = 148/204 (72.55%), Postives = 164/204 (80.39%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA S+MALSS +  GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 MAASSMALSSPTLTGKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-GGPLGEVVDPLYP-GGSFDPLG 201          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 5.347e-75
Identity = 148/203 (72.91%), Postives = 164/203 (80.79%), Query Frame = 2
Query:  143 MATSTMALSSSFVGKAVNLAPS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TMALSS  + +A   APS  + L    RI+MRKT +K   + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ+ILAIWA+QV LMGAV G +    G  G+++DP  P   A +PLG
Sbjct:    1 MAAATMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-GGPLGEVVDPLYP-GGAFDPLG 198          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.984e-75
Identity = 145/201 (72.14%), Postives = 163/201 (81.09%), Query Frame = 2
Query:  146 ATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            ++S+MALSS +  GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    5 SSSSMALSSPTLAGKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-GGPLGEVVDPLYP-GGSFDPLG 202          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 3.466e-74
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 2
Query:  230 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEP 712
            GR+SMRKT SK+VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLG  +LIHAQ+ILAIWA QV LMGAV G +    G  G++ DP  P
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIA-GGPLGEVTDPIYP 170          
The following BLAST results are available for this feature:
BLAST of EY756262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB22_MAIZE8.814e-7873.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH1.151e-7773.13Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_MAIZE3.349e-7773.89Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_HORVU4.837e-7673.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT1.077e-7572.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE3.135e-7572.28Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA5.347e-7572.55Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_ORYSJ5.347e-7572.91Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PEA6.984e-7572.14Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_SOYBN3.466e-7483.85Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756262 ID=EY756262; Name=EY756262; organism=Citrus sinensis; type=EST; length=1046bp
AAAAAAAAAAAAAAAAAAAAAAAGCAGTNNNCGNNNNTTCATATAAAAAA
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCGACCCACGCGT
CCGCGAACACTAGAGCTCACCAACAACTCCGATCATTGTAAAATGGCAAC
CTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTG
CCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAA
ACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAG
AGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTG
GTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGAC
CCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATG
GGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCA
ACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAAATC
TTCAGCGAGGGCGGGCTTGACTACTTGGGGAAACCAAACCTGATCCACGC
TCAAAACATCTTGGCCATCTGGGCTTTGCAAGTGGCCTTGATGGGAGCCG
TTGGAGGGTTACAAAATTGCTGGAGGGGCCGCTCGGGGAAAATGATTGAC
CCATTTGAACCCAGGTGGCCAGCTTTAAATCCATTGGGGTTTGGCTGATG
AACCCGGAAGTCTTTTGCTTAACCTCAAGGGTTAAGGAAATCAATAATAT
GGAAGGTTGGCTATGTTCCTCCAACGTTTGGTTTCCTCTGTTAAAGACCA
TTGCCCCCCGGAAAGGGAACCGTTTAAAAAATTTGGGCCCAACCCTTGGC
TTGACCCCGGCAAAAACAATGCGCTGGGCCAACCCCACAAACTTTGTTCC
CCGAAAATAGAACTCCCGGTTAGAAAAAATTCTTCCTCCTTCCGGATCTC
TGGGAATAAGGGAAATACGGTGTGGAGACCACGGAAGAATTTTATT
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