EY756251

Overview
NameEY756251
Unique NameEY756251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_STAEQ (Elongation factor Tu OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  I E
Sbjct:  307 AEVYVLSKDEGGRHTPFFTNYRPQFYFRTTDVTGVVNL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIFE 394          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_SACD2 (Elongation factor Tu OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 58/92 (63.04%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 280
            + +YVL K+EGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD V+M V LI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  320 SEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAC-----ELPEGVEMVMPGDNVQMTVTLIAPIAMEEGLRFAIREGGRTVGAGVVAKII 406          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_RHOS5 (Elongation factor Tu OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 280
            A  Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V     +  E ++MVMPGD +K  VELI P+A E+ +RFAIREGG+TVGAGV+  II
Sbjct:  304 AEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTV-----ELPEGTEMVMPGDNLKFNVELIAPIAMEEKLRFAIREGGRTVGAGVVSKII 390          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_RHIL3 (Elongation factor Tu OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V + VELI+P+A E+ +RFAIREGG+TVGAG++ SI+E
Sbjct:  304 AEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNVTVSVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE 391          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_HELMI (Elongation factor Tu OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +M MPGD +KM +EL   +A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  313 AEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGFI-----ELPEGVEMCMPGDNIKMTIELGKTIAIEEGLRFAIREGGRTVGAGVVTGIIE 400          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_GRABC (Elongation factor Tu OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 277
            A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG VS       E ++MVMPGD V M VELI P+A ++G+RFAIREGG+TVGAGV+  I
Sbjct:  309 AEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVSL-----PEGTEMVMPGDNVSMQVELIAPIAMDEGLRFAIREGGRTVGAGVVAKI 394          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_GLUOX (Elongation factor Tu OS=Gluconobacter oxydans GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 277
            A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M VELI P+A ++G+RFAIREGG+TVGAGV+ SI
Sbjct:  309 AEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVTL-----PEGTEMVMPGDNVAMDVELIAPIAMDEGLRFAIREGGRTVGAGVVSSI 394          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_GEOTN (Elongation factor Tu OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG ++       E  +MVMPGD V+M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  308 AQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIITL-----PEGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSW (Elongation factor Tu OS=Geobacillus sp. (strain WCH70) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG ++       E  +MVMPGD V+M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  308 AQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIITL-----PEGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_GEOKA (Elongation factor Tu OS=Geobacillus kaustophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.350e-27
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG ++       E  +MVMPGD V+M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  308 AQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIITL-----PEGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
The following BLAST results are available for this feature:
BLAST of EY756251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STAEQ3.350e-2763.44Elongation factor Tu OS=Staphylococcus epidermidis... [more]
EFTU_SACD23.350e-2763.04Elongation factor Tu OS=Saccharophagus degradans (... [more]
EFTU_RHOS53.350e-2764.13Elongation factor Tu OS=Rhodobacter sphaeroides (s... [more]
EFTU_RHIL33.350e-2762.37Elongation factor Tu OS=Rhizobium leguminosarum bv... [more]
EFTU_HELMI3.350e-2763.44Elongation factor Tu OS=Heliobacterium modesticald... [more]
EFTU_GRABC3.350e-2764.84Elongation factor Tu OS=Granulibacter bethesdensis... [more]
EFTU_GLUOX3.350e-2764.84Elongation factor Tu OS=Gluconobacter oxydans GN=t... [more]
EFTU_GEOTN3.350e-2763.44Elongation factor Tu OS=Geobacillus thermodenitrif... [more]
EFTU_GEOSW3.350e-2763.44Elongation factor Tu OS=Geobacillus sp. (strain WC... [more]
EFTU_GEOKA3.350e-2763.44Elongation factor Tu OS=Geobacillus kaustophilus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-D02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756251 ID=EY756251; Name=EY756251; organism=Citrus sinensis; type=EST; length=412bp
CCACGCGTCCGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCAC
CTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTG
ACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGAT
GGTTATGCCTGGCGACCGTGTCAAGATGGTTGTGGAGCTTATTATGCCAG
TGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACT
GTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACT
TTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCA
TATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCTAGGAAAAAAAAAA
AAAAAAAAAAAA
back to top