EY756251

Overview
NameEY756251
Unique NameEY756251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:702..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPP (Elongation factor Tu 2 OS=Yersinia pestis (strain Pestoides F) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V MVV LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  307 SEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPE (Elongation factor Tu-B OS=Yersinia pestis GN=tufB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V MVV LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  307 SEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPA (Elongation factor Tu 2 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V MVV LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  307 SEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU2_XANCB (Elongation factor Tu 2 OS=Xanthomonas campestris pv. campestris (strain B100) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL K+EGGRH+PFF GYRPQFY RTTD+TG          E  +MVMPGD VKMVV LI PVA ++G+RFAIREGG+TVGAGV+  II+
Sbjct:  309 AEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDITGACQL-----PEGVEMVMPGDNVKMVVTLINPVAMDEGLRFAIREGGRTVGAGVVAKIIK 396
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU2_XANC8 (Elongation factor Tu 2 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL K+EGGRH+PFF GYRPQFY RTTD+TG          E  +MVMPGD VKMVV LI PVA ++G+RFAIREGG+TVGAGV+  II+
Sbjct:  309 AEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDITGACQL-----PEGVEMVMPGDNVKMVVTLINPVAMDEGLRFAIREGGRTVGAGVVAKIIK 396
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU2_THET8 (Elongation factor Tu-B OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufB PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            ASVYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V           +MVMPGD V   VELI PVA E+G+RFAIREGG+TVGAGV+  I+E
Sbjct:  319 ASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQL-----PPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU1_YERPS (Elongation factor Tu 1 OS=Yersinia pseudotuberculosis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V MVV LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  307 SEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU1_YERP3 (Elongation factor Tu 1 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD V MVV LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  307 SEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU1_XANCP (Elongation factor Tu-A OS=Xanthomonas campestris pv. campestris GN=tufA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL K+EGGRH+PFF GYRPQFY RTTD+TG          E  +MVMPGD VKMVV LI PVA ++G+RFAIREGG+TVGAGV+  II+
Sbjct:  309 AEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDITGACQL-----PEGVEMVMPGDNVKMVVTLINPVAMDEGLRFAIREGGRTVGAGVVAKIIK 396
[Close]
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU1_THETH (Elongation factor Tu-A OS=Thermus thermophilus GN=tufA PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            ASVYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V           +MVMPGD V   VELI PVA E+G+RFAIREGG+TVGAGV+  I+E
Sbjct:  319 ASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQL-----PPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
The following BLAST results are available for this feature:
BLAST of EY756251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_YERPP5.168e-2862.37Elongation factor Tu 2 OS=Yersinia pestis (strain ... [more]
EFTU2_YERPE5.168e-2862.37Elongation factor Tu-B OS=Yersinia pestis GN=tufB ... [more]
EFTU2_YERPA5.168e-2862.37Elongation factor Tu 2 OS=Yersinia pestis bv. Anti... [more]
EFTU2_XANCB5.168e-2865.59Elongation factor Tu 2 OS=Xanthomonas campestris p... [more]
EFTU2_XANC85.168e-2865.59Elongation factor Tu 2 OS=Xanthomonas campestris p... [more]
EFTU2_THET85.168e-2867.74Elongation factor Tu-B OS=Thermus thermophilus (st... [more]
EFTU1_YERPS5.168e-2862.37Elongation factor Tu 1 OS=Yersinia pseudotuberculo... [more]
EFTU1_YERP35.168e-2862.37Elongation factor Tu 1 OS=Yersinia pseudotuberculo... [more]
EFTU1_XANCP5.168e-2865.59Elongation factor Tu-A OS=Xanthomonas campestris p... [more]
EFTU1_THETH5.168e-2867.74Elongation factor Tu-A OS=Thermus thermophilus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-D02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756251 ID=EY756251; Name=EY756251; organism=Citrus sinensis; type=EST; length=412bp
CCACGCGTCCGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCAC
CTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTG
ACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGAT
GGTTATGCCTGGCGACCGTGTCAAGATGGTTGTGGAGCTTATTATGCCAG
TGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACT
GTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACT
TTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCA
TATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCTAGGAAAAAAAAAA
AAAAAAAAAAAA
back to top