EY756242

Overview
NameEY756242
Unique NameEY756242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 2.870e-60
Identity = 107/139 (76.98%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V+GT+ F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAPED++RHA                 + D+QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:   13 VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.748e-60
Identity = 105/139 (75.54%), Postives = 116/139 (83.45%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V+G V F QEGDGPTTV+G +SGL PG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAP DDNRHA            T  F++ D+QIPLSGP+SI+GRAVVVHADPDDLGKGGHELSKSTGNAGGR+ACG++GLQG
Sbjct:   16 VKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 8.349e-60
Identity = 107/138 (77.54%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 420
            V+GTV FAQEG+GPTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSK+TGNAGGR+ACG+IGLQ
Sbjct:   14 VQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 8.349e-60
Identity = 105/139 (75.54%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V GT+ F Q  DGPTTV+G +SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDD RHA              +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSK+TGNAGGRVACG+IGLQG
Sbjct:   14 VSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.090e-59
Identity = 105/139 (75.54%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V GT++F+QEG+GPTTV+G+L+GLKPG HGFH+HALGDTTNGC+STGPHFNP GKEHGAPED+ RHA            T +FT+ DN IPL+G NSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   14 VSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.090e-59
Identity = 107/139 (76.98%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V GT+ F Q+GD PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   14 VSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.090e-59
Identity = 109/139 (78.42%), Postives = 116/139 (83.45%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V GT+ F QEGDG TTVSG++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HGAPED NRHA            TATFT+ D QIPL+GPNSI+GRAVVVHADPDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:   14 VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 2.429e-59
Identity = 106/139 (76.26%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V GT+ F Q+G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGR+ACGIIGLQG
Sbjct:   14 VSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 3.173e-59
Identity = 106/139 (76.26%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V+GT+ F QEG+G TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HGAPED NRHA            TATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:   14 VKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 5.412e-59
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            V+GT+ F+QEGDGPT+V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHGAP+D+NRHA             A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   14 VKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
The following BLAST results are available for this feature:
BLAST of EY756242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC2_MAIZE2.870e-6076.98Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_PINSY3.748e-6075.54Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_ZANAE8.349e-6077.54Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_CARPA8.349e-6075.54Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_PEA1.090e-5975.54Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_NICPL1.090e-5976.98Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_ARATH1.090e-5978.42Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC2_SOLLC2.429e-5976.26Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC1_BRAJU3.173e-5976.26Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC2_ORYSJ5.412e-5976.26Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756242 ID=EY756242; Name=EY756242; organism=Citrus sinensis; type=EST; length=561bp
CCACGCGTCCGGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAAC
AACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCC
ATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCC
CACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCG
TCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTA
CTTTTACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATT
ATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGG
CGGTCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTT
GCGGCATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAAT
AAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTG
AGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTT
GTTGTGTAAAA
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