EY756242

Overview
NameEY756242
Unique NameEY756242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.752e-47
Identity = 87/137 (63.50%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G V+  Q+ DGPTTV   ++GL PG HGFH+H  GDTTNGCMSTGPHFNP G  HGAP D+ RHA             A  T+VDNQIPLSGPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   80 VEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.106e-47
Identity = 88/138 (63.77%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    4 RVRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +V G V+ +QE +GPTTV   L+GL PG HGFH+H  GDTTNGCMSTG HFNP    HGAPEDD RHA             A  T+VDNQIPLSGP+S+IGRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:    1 QVEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 138          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.080e-46
Identity = 85/137 (62.04%), Postives = 102/137 (74.45%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G V+  Q+ +GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:   63 VEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.023e-46
Identity = 86/137 (62.77%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G V+  QE + PTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS+IGRA+VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:   63 VEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.962e-46
Identity = 85/138 (61.59%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    4 RVRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +V G V+  Q+  GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VD QIPLSGPNS++GRA VVH   DDLGKGGHELS STGNAGGR+ACG++GL
Sbjct:   71 QVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 208          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.406e-45
Identity = 87/138 (63.04%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 420
            V+G++ F Q+  G T V G ++GL PG HGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RHA             A  +V D QIPLSG +SI+GRAVVVHAD DDLG+ GHELSK+TGNAG RV CGIIGLQ
Sbjct:   16 VKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQ 153          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.448e-45
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G V+ +Q+ DGPTTV+  ++GL PG HGFH+H  GDTTNGCMSTG HFNP    HGAP D+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   78 VEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.096e-43
Identity = 83/137 (60.58%), Postives = 96/137 (70.07%), Query Frame = 1
Query:   10 RGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +GTV F QEG+G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:   14 KGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 3.188e-43
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 1
Query:   10 RGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +GTV F QE +G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                  + D++I L G NSIIGR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:   14 KGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.101e-43
Identity = 82/137 (59.85%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   10 RGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +GTV F QE +  P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142          
The following BLAST results are available for this feature:
BLAST of EY756242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODCP_PETHY4.752e-4763.50Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_PINSY8.106e-4763.77Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_PEA3.080e-4662.04Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_MEDSA4.023e-4662.77Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_ORYSJ8.962e-4661.59Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODC2_MESCR3.406e-4563.04Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODCP_SOLLC4.448e-4561.31Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC_DROVI1.096e-4360.58Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC_DROWI3.188e-4359.85Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_DROBS7.101e-4359.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756242 ID=EY756242; Name=EY756242; organism=Citrus sinensis; type=EST; length=561bp
CCACGCGTCCGGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAAC
AACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCC
ATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCC
CACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCG
TCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTA
CTTTTACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATT
ATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGG
CGGTCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTT
GCGGCATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAAT
AAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTG
AGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTT
GTTGTGTAAAA
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