EY756242

Overview
NameEY756242
Unique NameEY756242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 2.983e-41
Identity = 81/137 (59.12%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   10 RGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +GTV F QE  + P  VSG + GL    HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKSTGNAG R+ CG+IG+
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.646e-41
Identity = 77/137 (56.20%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V GTV F Q  DGP T+ GS++GL PG HGFHVHA GD TNGC+S GPH+NP  K HG P+D+ RH              A F + D Q+ LSG  SIIGR +VVH   DDLGKGG E S  TGNAG R+ACG+IG+
Sbjct:   13 VTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.481e-40
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT++F Q+  G  TV+G +SGL PG HGFH+H  GD TNGC S+G HFNP  + HGAPEDD RH              AT  + D  I L+G +SIIGRAVVVHA  DDLGKGGHE SK+TG+AGGR++CG+IG+
Sbjct:   13 VKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.308e-40
Identity = 79/138 (57.25%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    7 VRGTVSFAQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+G V F QE D GP  V    SGLK G HGFHVH  GDTTNGC S G HFNP  +EHGAPED  RH              A +   D  I L+G +SIIGR +V+H + DDLG+GGHELSK TGNAGGR+ACG+IGL
Sbjct:   13 VKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGL 150          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 9.597e-40
Identity = 77/138 (55.80%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    7 VRGTVSFAQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GTV F Q+    P  V+G ++GL  G HGFHVH  GD TNGC S GPHFNP G  HGAP D NRH                  + D  I L G NSI+GR +VVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:   13 VKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.125e-39
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   91 HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 423
            HGFHVHALGDTTNGCMSTGPHFNP GKEHGAP+D+NRHA             A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSK+TGN+   +     G+QG
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQG 118          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.061e-38
Identity = 79/139 (56.83%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    7 VRGTVSFAQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V GTV F Q+ +  P  VSG + GL  G HGFHVH  GD TNGC S G HFNP  ++HG P    RH               T  ++ D+QI L GPNSIIGR +VVHADPDDLG GGHELSK+TGNAGGR+ACG+IGL
Sbjct:   13 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.386e-38
Identity = 72/137 (52.55%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+G + F Q+ +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A  ++ D+ I LSG NSIIGR +VVH  PDDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.364e-38
Identity = 75/138 (54.35%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    7 VRGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PED+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:   15 VQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 71/137 (51.82%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+G + F Q+G+GP T+SGS++GL  G HGFHVH  GD TNGC S G HFNP GK HG P+D+ RH              A   + D+ I L+G  SIIGR +VVH   DDLGKGG++ S  TGNAG R+ACG++G+
Sbjct:   28 VKGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVGI 164          
The following BLAST results are available for this feature:
BLAST of EY756242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROER2.983e-4159.12Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_PRIGL6.646e-4156.20Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_HALRO1.481e-4056.93Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_SCHMA4.308e-4057.25Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_CERCA9.597e-4055.80Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_ASPJA8.125e-3967.57Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_BOMMO1.061e-3856.83Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC_CAVPO1.386e-3852.55Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC_CALJA2.364e-3854.35Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_CARCR4.032e-3851.82Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756242 ID=EY756242; Name=EY756242; organism=Citrus sinensis; type=EST; length=561bp
CCACGCGTCCGGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAAC
AACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCC
ATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCC
CACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCG
TCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTA
CTTTTACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATT
ATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGG
CGGTCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTT
GCGGCATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAAT
AAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTG
AGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTT
GTTGTGTAAAA
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