EY756242

Overview
NameEY756242
Unique NameEY756242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    7 VRGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:   15 VQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    7 VRGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:   15 VQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    7 VRGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:   15 VQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 75/138 (54.35%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    7 VRGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V GTV F QEG+  P  V+G ++GL PG HGFHVHA GD TNGC+S GPHFNP  K HG P D  RH              A   + D  + LSG +SIIGR +V+H   DDLGKGG+E S  TGNAGGR+ACG+IG+
Sbjct:   15 VTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.001e-37
Identity = 77/141 (54.61%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    7 VRGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKSTGNAGGRVACGIIGL 417
            V G + F QE +G PTT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P D+ RH             TA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAG RVACGI+ +
Sbjct:   14 VSGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAV 154          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.458e-37
Identity = 73/136 (53.68%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 414
            V+G V F Q+ +G  +V G + GL  G HGFH+H  GD TNGCMS G HFNP  K HGAP D +RH              A F + D+ I L GPNSIIGR  VVH   DDLGKGG++ S  TGNAGGR+ACG+IG
Sbjct:   14 VKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHV-GDLGNVTAEGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIG 148          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37
Identity = 73/137 (53.28%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAGGR+ACG+IG+
Sbjct:   15 VQGTIRFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGI 150          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37
Identity = 73/138 (52.90%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    7 VRGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PED+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 75/140 (53.57%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKSTGNAGGRVACGIIGL 417
            + GT+ F Q+ +  TT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P D+ RH             TA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAGGRVACGI+ +
Sbjct:   59 INGTIHFQQDKNS-TTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAI 197          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 72/137 (52.55%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD+ I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
The following BLAST results are available for this feature:
BLAST of EY756242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_MACMU1.532e-3753.62Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU1.532e-3753.62Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA1.532e-3753.62Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_DANRE1.532e-3754.35Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_BRUPA2.001e-3754.61Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC2_XENLA4.458e-3753.68Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_SHEEP5.823e-3753.28Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_CEBAP5.823e-3752.90Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODE_BRUPA9.932e-3753.57Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_BOSMU9.932e-3752.55Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756242 ID=EY756242; Name=EY756242; organism=Citrus sinensis; type=EST; length=561bp
CCACGCGTCCGGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAAC
AACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCC
ATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCC
CACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCG
TCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTA
CTTTTACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATT
ATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGG
CGGTCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTT
GCGGCATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAAT
AAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTG
AGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTT
GTTGTGTAAAA
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