EY756242

Overview
NameEY756242
Unique NameEY756242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 73/136 (53.68%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIG 414
            V+G V F Q+ DG  TV G + GL  G HGFH+H  GD TNGC+S GPHFNP  K HG+P+D +RH              A F   D QI L G  SIIGR  VVH   DDLGKGG + S  TGNAGGR+ACG+IG
Sbjct:   14 VKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHV-GDLGNVTAEGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIG 148          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 73/139 (52.52%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    4 RVRGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +V G V F QE  D P TV+  ++GL+ G HGFHVHA GDTTNGC+S GPHFNP GK HGAP D++RH                 T+ D  I L G ++I+GR +VVHAD DDLGKGG   S +TG AG R+ CG+IG+
Sbjct:   13 KVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGV 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.694e-36
Identity = 70/137 (51.09%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT+ F  +G+    V+G++ GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D  RH              AT  + D+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.213e-36
Identity = 71/137 (51.82%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V GT+ F Q+G GP  VSG+++GL  G HGFHVH   D T GC S GPHFNP  K+HG P+D  RH              A  ++ D+ I LSG  SIIGR +VVH   DDLGKG +E S  TGNAG R+ACG+IG+
Sbjct:   15 VEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.890e-36
Identity = 71/137 (51.82%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G + F Q+G GP  V+G ++GL  G HGFHVH  GD TNGC S G HFNP GK+HG P+D +RH              A   + D+ I L+GP+ IIGR +VVHA  DDLG+GG   SK TGNAG R+ACG+IG+
Sbjct:   16 VEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHV-GDLGNVTAKGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGI 151          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.890e-36
Identity = 72/137 (52.55%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.438e-36
Identity = 75/141 (53.19%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    7 VRGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKSTGNAGGRVACGIIGL 417
            V G + F Q+ +G PTTV+G + GL PG HGFH+H  GDTTNGC+S GPHFNP  K HG   D+ RH             TA  ++ D  I L GPNSIIGR++VVHAD DDLGKG     + S  TGNAG RVACGI+ +
Sbjct:   14 VSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIVAI 154          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.438e-36
Identity = 71/138 (51.45%), Postives = 87/138 (63.04%), Query Frame = 1
Query:    7 VRGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+GT+ F Q+  G P  +SG ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.434e-35
Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 1
Query:    7 VRGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G ++F Q +   P  +SG +SGLK G HGFHVH  GDTTNGC+S G HFNP  KEHG+P D+NRH              +   + DN I L G NSIIGR++VVH   DDLG+G  + SK TGNAG R+ CGII L
Sbjct:   12 VDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGIIAL 149          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.446e-35
Identity = 70/138 (50.72%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    7 VRGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V+G + F Q+  G P  VSG ++GL  G HGFHVH  GD T GC + GPHFNP  K+HG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
The following BLAST results are available for this feature:
BLAST of EY756242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC1_XENLA9.932e-3753.68Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC1_DICDI9.932e-3752.52Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_PIG1.694e-3651.09Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_CANFA2.213e-3651.82Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_CHICK2.890e-3651.82Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_BOVIN2.890e-3652.55Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_ONCVO6.438e-3653.19Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_MOUSE6.438e-3651.45Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC5_DICDI1.434e-3552.17Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC_RAT2.446e-3550.72Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756242 ID=EY756242; Name=EY756242; organism=Citrus sinensis; type=EST; length=561bp
CCACGCGTCCGGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAAC
AACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCC
ATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCC
CACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCG
TCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTA
CTTTTACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATT
ATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGG
CGGTCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTT
GCGGCATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAAT
AAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTG
AGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTT
GTTGTGTAAAA
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