EY756242

Overview
NameEY756242
Unique NameEY756242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.532e-34
Identity = 71/140 (50.71%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    4 RVRGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +V GTV+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HGAP D  RH              A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:   13 KVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 4.614e-34
Identity = 71/139 (51.08%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    7 VRGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G ++F QE +G P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HGAP D  RH              A+  + D  + L GP SIIGR +VVHA  DD GKGG+  S  TGNAG R ACG+IG+
Sbjct:   14 VTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 144.05 bits (362), Expect = 4.614e-34
Identity = 74/140 (52.86%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    4 RVRGTVSFAQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +V G V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHGAPEDDNRH              A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  SK TGNAG R ACG+IGL
Sbjct:   13 KVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.025e-34
Identity = 72/140 (51.43%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    4 RVRGTVSFAQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            ++ GTV+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HGAPED  RH              A  +  D  I L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:   13 KITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 67/135 (49.63%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   13 GTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            G +   Q G     ++GS+SGL+PG HGFH+H  GD  NGC++ G HFNP    HGAPED NRH                  + D+ I L+G +++IGRA+V+HAD DDLG+G  ELSK+TGNAG RVACG+IG+
Sbjct:   49 GIIDLVQTGT-LVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 71/139 (51.08%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    7 VRGTVSFAQEGDGP-TTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G V F QE D   TT+S +++G +P   HGFH+H  GD TNGC S+G HFNP  K HG+PED+NRH              A  +  D  I + GP SI+GR VVVHA  DDLG+GG+E S  TGNAG R ACG+IG+
Sbjct:   14 VSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33
Identity = 71/140 (50.71%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    4 RVRGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HGAPEDD RH              A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:   13 KVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.753e-33
Identity = 71/140 (50.71%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    4 RVRGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            +V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HGAPEDD RH              A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:   13 KVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 69/139 (49.64%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    7 VRGTVSFAQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G V+  Q  +  PTT++  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HGAP+D+NRH              A   + D+ + L GP S++GR+VVVHA  DDLGKGG+E S  TGNAG R ACG+IGL
Sbjct:   14 VSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152          
BLAST of EY756242 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.906e-33
Identity = 67/138 (48.55%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    7 VRGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 417
            V G + F Q+ +G P  + G + GL  G HGFHVH  GD T GC + G HFNP  K+HG P+D+ RH              A   + D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   15 VHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
The following BLAST results are available for this feature:
BLAST of EY756242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_CORMI3.532e-3450.71Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_CRYGA4.614e-3451.08Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC1_DEBHA4.614e-3452.86Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_ASPFU6.025e-3451.43Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODE_HAECO1.342e-3349.63Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_ASHGO1.342e-3351.08Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_ASPNG1.753e-3350.71Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_ASPNC1.753e-3350.71Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_CANGA2.990e-3349.64Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_HORSE3.906e-3348.55Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756242 ID=EY756242; Name=EY756242; organism=Citrus sinensis; type=EST; length=561bp
CCACGCGTCCGGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAAC
AACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCC
ATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCC
CACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCG
TCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTA
CTTTTACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATT
ATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGG
CGGTCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTT
GCGGCATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAAT
AAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTG
AGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTT
GTTGTGTAAAA
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