EY756240

Overview
NameEY756240
Unique NameEY756240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.199e-53
Identity = 111/228 (48.68%), Postives = 139/228 (60.96%), Query Frame = 3
Query:  117 MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCI 731
            M   +D NPF+E++VNPFS      A                  VPSV+S         EP  FG    ATVDIPLD+  + K +E+EL + EA+L            A  +AG+  +++NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV   W+KG GVKI+ LA IY + GVP +Y LWYRPLY AMRTDSALK   FFLVYL HI FC+
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCV 224          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.899e-53
Identity = 110/228 (48.25%), Postives = 139/228 (60.96%), Query Frame = 3
Query:  117 MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCI 731
            M   +D NPF+E++VNPFS      A                  VPS++S         EP  FG    ATVDIPLD+  + K +E+EL + EA+L            A  +AG+  +++NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV   W+KG GVKI+ LA IY + GVP +Y LWYRPLY AMRTDSALK   FFLVYL HI FC+
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCV 224          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.861e-52
Identity = 107/223 (47.98%), Postives = 135/223 (60.54%), Query Frame = 3
Query:  138 NPFDE---EEVNPFSN-----GPAAPAS-----------RSQVPSVTS------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCI 731
            NPF+E   +EVNPF++     G A  +S           R   P  T       EP  F   +   VDIP+D   + K +E+EL + EA+L            A  +AG+  +D+NWPPFFPIIH+DI  EIP+H QR QY+AFAS  G+VLCL +N+I V   WIKG G KI+FLA IY +LG P +Y LWYRPLYRAMR +SALK  WFFL YL+HI FC+
Sbjct:    9 NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCV 231          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM3_MOUSE (Secretory carrier-associated membrane protein 3 OS=Mus musculus GN=Scamp3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.956e-13
Identity = 63/221 (28.51%), Postives = 88/221 (39.82%), Query Frame = 3
Query:  138 NPFDEEEVNPFSNGPA---APASRSQVPSVTS-------EPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCW-IKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCI 731
            NPF+  E  P    PA   AP      PSV S       EP  +G          AT ++ L    E  +K  EL   E +L             +   G  T   NWPP        P    DIS EIP   Q+     +  W    L L+ N  A +  + +  G    F L+ ++ LL  P S+  WYRP+Y+A R+DS+     FF ++ +   F +
Sbjct:   42 NPFENREPPPAYEPPAPAPAPLPPPSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAEL-LKKQEELNRKAEELDRRERELQH-----------VALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFFACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVFFV 250          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM4_MOUSE (Secretory carrier-associated membrane protein 4 OS=Mus musculus GN=Scamp4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 40/121 (33.06%), Postives = 56/121 (46.28%), Query Frame = 3
Query:  414 PPFFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCIXXXXXXXXSSWG 767
            PPF P+    + D S EIP+  Q L    +  W      L  N++A +  WI GG    F LA ++ +L  P SY  W+RP Y+A R DS+     FF ++     F +        S WG
Sbjct:   12 PPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIF--GAQFVLTVIQAIGFSGWG 130          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM3_HUMAN (Secretory carrier-associated membrane protein 3 OS=Homo sapiens GN=SCAMP3 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 61/216 (28.24%), Postives = 86/216 (39.81%), Query Frame = 3
Query:  138 NPFDEEEVNPFSNGPA-APASRSQVPSVT-------SEPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWI----KGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLI 713
            NPF+  E  P    PA AP      PS+        +EP  +G          AT ++ L    E  +K  EL   E +L                 G  T   NWPP        P    DIS EIP   Q+     +  W    L L+ N +A +  +      G G   F L+ ++ LL  P S+  WYRP+Y+A R+DS+     FF ++ +
Sbjct:   42 NPFETREPPPAYEPPAPAPLPPPSAPSLQPSRKLSPTEPKNYGSYSTQASAAAATAEL-LKKQEELNRKAEELDRRERELQHAAL-----------GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETNNGAG---FGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFV 242          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM4_PONAB (Secretory carrier-associated membrane protein 4 OS=Pongo abelii GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.594e-11
Identity = 42/128 (32.81%), Postives = 60/128 (46.88%), Query Frame = 3
Query:  402 DRNWPP---FFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCIXXXXXXXXSSWG 767
            + N+PP   F P+    + + S EIP+  Q L    +  W      L  N+IA +  WI GG    F LA ++ LL  P SY  W+RP+Y+A R DS+     FF ++     F +        S WG
Sbjct:    5 ENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLFTPCSYVCWFRPVYKAFRADSSFNFMAFFFIF--GAQFVLTVIQAIGFSGWG 130          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM4_RAT (Secretory carrier-associated membrane protein 4 OS=Rattus norvegicus GN=Scamp4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.082e-11
Identity = 38/117 (32.48%), Postives = 53/117 (45.30%), Query Frame = 3
Query:  417 PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCIXXXXXXXXSSWG 767
            P  P  + D S EIP+  Q L    +  W      L  N++A +  WI GG    F LA ++ +L  P SY  W+RP Y+A R DS+     FF ++     F +        S WG
Sbjct:   16 PLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCTTLGVNLVACLAWWIAGGAGANFGLAMLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMAFFFIF--GAQFVLTVIQAIGFSGWG 130          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM4_HUMAN (Secretory carrier-associated membrane protein 4 OS=Homo sapiens GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 41/128 (32.03%), Postives = 59/128 (46.09%), Query Frame = 3
Query:  402 DRNWPP---FFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCIXXXXXXXXSSWG 767
            + N+PP   F P+    + + S EIP+  Q L    +  W      L  N+IA +  WI GG    F LA ++ LL  P  Y  W+RP+Y+A R DS+     FF ++     F +        S WG
Sbjct:    5 ENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIF--GAQFVLTVIQAIGFSGWG 130          
BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM4_BOVIN (Secretory carrier-associated membrane protein 4 OS=Bos taurus GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 42/134 (31.34%), Postives = 59/134 (44.03%), Query Frame = 3
Query:  417 PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLIHIGFCIXXXXXXXXSSWGVIDGHPSGIDAFLIPIG 818
            P  P  + + S EIPI  Q L    +  W      L  N++A +  WI GG    F LA ++ LL  P  Y  W+RP Y+A R+DS+     FF ++     F +        S WG   G  + I  F   +G
Sbjct:   16 PLKPCFYQNFSDEIPIEHQVLVKRIYRLWLFYCATLGVNLVACLAWWIAGGSGANFGLALLWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIF--GAQFILTIIQAVGFSGWGAC-GWLAAIGFFQTSVG 146          
The following BLAST results are available for this feature:
BLAST of EY756240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SCAM1_ORYSJ2.199e-5348.68Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI4.899e-5348.25Putative secretory carrier-associated membrane pro... [more]
SCAM4_ORYSJ1.861e-5247.98Secretory carrier-associated membrane protein 4 OS... [more]
SCAM3_MOUSE4.956e-1328.51Secretory carrier-associated membrane protein 3 OS... [more]
SCAM4_MOUSE4.195e-1233.06Secretory carrier-associated membrane protein 4 OS... [more]
SCAM3_HUMAN5.479e-1228.24Secretory carrier-associated membrane protein 3 OS... [more]
SCAM4_PONAB1.594e-1132.81Secretory carrier-associated membrane protein 4 OS... [more]
SCAM4_RAT2.082e-1132.48Secretory carrier-associated membrane protein 4 OS... [more]
SCAM4_HUMAN4.638e-1132.03Secretory carrier-associated membrane protein 4 OS... [more]
SCAM4_BOVIN7.912e-1131.34Secretory carrier-associated membrane protein 4 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756240 ID=EY756240; Name=EY756240; organism=Citrus sinensis; type=EST; length=938bp
CCACGCGTCCGGCAGCAACTAATAGCAGTGTTAGTGAATTTGCGAAGTTA
GGTGCAAAATTTAGGGATCTGAAAGAAAGAAAAAAACCAAAAAAAAAGAA
GAAAAAACACGAATCAATGAATCGCCACCACGACCCAAATCCCTTCGATG
AAGAAGAGGTCAATCCATTTTCGAATGGCCCGGCTGCTCCTGCATCAAGG
TCACAGGTTCCTTCTGTGACATCTGAACCTATTGGATTTGGACAGAAATA
TGGGGCGACAGTTGATATTCCACTAGATAATATGAACGAGCCTAAGAAAA
AAGAGAGAGAGCTTGCATCATGGGAAGCAGATCTTAAAAGGAGGGAAAAG
GAAATAAAACGAAGAGAAGAGGCTATTGTCAAAGCTGGCGTTCCCACAGA
CGATAGAAATTGGCCACCTTTTTTTCCAATTATTCATCATGACATATCGA
AGGAGATACCAATTCATGCTCAAAGGCTGCAGTATCTTGCTTTTGCTAGT
TGGTTTGGTATAGTTCTCTGTCTTGTATTCAATGTAATTGCCGTGATTGT
CTGTTGGATTAAAGGCGGTGGTGTCAAAATCTTTTTCCTTGCAACAATTT
ATGCTTTGCTTGGAGTGCCTATGTCATATGGTCTATGGTACAGGCCTCTT
TATCGAGCAATGAGGACGGATAGTGCATTGAAAGTCAGCTGGTTTTTCCT
GGTCTACTTGATCCACATCGGTTTTTGTATCTTGCGGCTATTGCTCCTCC
TGTTGTCTTCATGGGGAGTCATTGACGGGCATCCTAGCGGAATTGATGCA
TTTCTGATCCCTATTGGCTGGATCTTTTAATGATTGGATTGGCTTGGTCG
NCTGGGAGCACTCCAAGCTTATGGGTATTCAAAAATTTACTGTTTTTCGG
GGAACAGGGAAACTGATGCTGGGATTTTTTTCAGGTTG
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