EY756240

Overview
NameEY756240
Unique NameEY756240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756240_ssr302 microsatellite EY756240_ssr302:302..311. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756240_ssr71 microsatellite EY756240_ssr71:71..82. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY756240 vs. ExPASy Swiss-Prot
Match: SCAM3_BOVIN (Secretory carrier-associated membrane protein 3 OS=Bos taurus GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 57/213 (26.76%), Postives = 84/213 (39.44%), Query Frame = 3 
Query:  138 NPFDEEEVNPFSNGPA--------APASRSQVPSVTSEPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCW-IKGGGVKIFFLATIYALLGVPMSYGLWYRPLYRAMRTDSALKVSWFFLVYLI 713
            NPF+  E  P    PA        AP  +S      +EP  +G          AT ++ L    E  +K  EL   E +L                    T   NWPP        P    DIS EIP   Q+     +  W    L L+ N +A +  + ++      F L+ ++ LL  P S+  WYRP+Y+A R+DS+     FF ++ +
Sbjct:   42 NPFETREPPPSYEPPAPVPIAPPSAPPLQSSRKLSPTEPKNYGSYSTQASTAAATAEL-LKKQEELNRKAEELDRRERELQHAAL-----------GSTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETSNGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSSNFFVFFFIFFV 242
The following BLAST results are available for this feature:
BLAST of EY756240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SCAM3_BOVIN7.912e-1126.76Secretory carrier-associated membrane protein 3 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756240 ID=EY756240; Name=EY756240; organism=Citrus sinensis; type=EST; length=938bp
CCACGCGTCCGGCAGCAACTAATAGCAGTGTTAGTGAATTTGCGAAGTTA
GGTGCAAAATTTAGGGATCTGAAAGAAAGAAAAAAACCAAAAAAAAAGAA
GAAAAAACACGAATCAATGAATCGCCACCACGACCCAAATCCCTTCGATG
AAGAAGAGGTCAATCCATTTTCGAATGGCCCGGCTGCTCCTGCATCAAGG
TCACAGGTTCCTTCTGTGACATCTGAACCTATTGGATTTGGACAGAAATA
TGGGGCGACAGTTGATATTCCACTAGATAATATGAACGAGCCTAAGAAAA
AAGAGAGAGAGCTTGCATCATGGGAAGCAGATCTTAAAAGGAGGGAAAAG
GAAATAAAACGAAGAGAAGAGGCTATTGTCAAAGCTGGCGTTCCCACAGA
CGATAGAAATTGGCCACCTTTTTTTCCAATTATTCATCATGACATATCGA
AGGAGATACCAATTCATGCTCAAAGGCTGCAGTATCTTGCTTTTGCTAGT
TGGTTTGGTATAGTTCTCTGTCTTGTATTCAATGTAATTGCCGTGATTGT
CTGTTGGATTAAAGGCGGTGGTGTCAAAATCTTTTTCCTTGCAACAATTT
ATGCTTTGCTTGGAGTGCCTATGTCATATGGTCTATGGTACAGGCCTCTT
TATCGAGCAATGAGGACGGATAGTGCATTGAAAGTCAGCTGGTTTTTCCT
GGTCTACTTGATCCACATCGGTTTTTGTATCTTGCGGCTATTGCTCCTCC
TGTTGTCTTCATGGGGAGTCATTGACGGGCATCCTAGCGGAATTGATGCA
TTTCTGATCCCTATTGGCTGGATCTTTTAATGATTGGATTGGCTTGGTCG
NCTGGGAGCACTCCAAGCTTATGGGTATTCAAAAATTTACTGTTTTTCGG
GGAACAGGGAAACTGATGCTGGGATTTTTTTCAGGTTG
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