EY756239

Overview
NameEY756239
Unique NameEY756239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_YARLI (Mediator of RNA polymerase II transcription subunit 7 OS=Yarrowia lipolytica GN=MED7 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 29/87 (33.33%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   51 ELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLK 311
            EL+ L + L L  +EL+ ++   P Q+  + E + ++  N+HH+LN  RPHQAR +L+ +++ QI  +KQ VE+I++  ++ +  ++
Sbjct:  106 ELKKLTKSLLLAFVELTGIMGVSPEQFPAKFEHVRVLLINIHHILNEYRPHQARESLVTLMQQQINDKKQHVENIRQSCDKVRDTIR 192          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_ASPNC (Mediator of RNA polymerase II transcription subunit 7 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=med7 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query:    6 RPSALLPGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREE 293
            R S   P   ++    L  +++ L L+ LE   VL   P Q+  +VED+  +F N HHLLN  RPHQAR +LI ++E Q+ R K+ ++ + + + E
Sbjct:  115 RQSPSEPSRPLNHAYYLLKISKSLLLNFLEFVGVLSVSPEQFESKVEDLRNLFINAHHLLNLYRPHQARESLIMMMEEQLSRTKEEIQQMDKLKAE 210          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_KLULA (Mediator of RNA polymerase II transcription subunit 7 OS=Kluyveromyces lactis GN=MED7 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 3
Query:   27 GPNIDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 314
            G N + K +E + L + L L+ LEL  +L    S+Y +++++I +I  N+HHLLN  RPHQ+R +LI + E Q++ +++ +E I +  +E + +L +
Sbjct:  116 GTNYENKIQESKKLMKSLLLNFLELIGILGVDSSRYEKKLDEIRVIAINIHHLLNEYRPHQSRESLIMLFEEQLEHKRKEMEHINKVCDEVESKLAQ 212          
The following BLAST results are available for this feature:
BLAST of EY756239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
MED7_YARLI6.459e-1133.33Mediator of RNA polymerase II transcription subuni... [more]
MED7_ASPNC6.459e-1136.46Mediator of RNA polymerase II transcription subuni... [more]
MED7_KLULA8.435e-1135.05Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756239 ID=EY756239; Name=EY756239; organism=Citrus sinensis; type=EST; length=608bp
CCACGCGTCCGTCAGCTTTACTTCCAGGACCAAATATTGATTTCAAGAAA
GAACTGAGGTCACTGAACAGAGAATTGCAGCTGCACATATTGGAACTTTC
TGATGTCCTTGTTGAGAGACCATCTCAATATGCCAGGAGAGTGGAAGACA
TATCTCTTATATTCAAGAACTTGCATCATCTTCTCAATTCATTACGTCCT
CATCAGGCTAGAGCAACATTAATACATATCCTAGAACTTCAGATACAGCG
CCGTAAACAAGCTGTGGAGGATATAAAGAGGCGGAGAGAAGAAGCACAAC
GACGTCTCAAGGAGTCCCTTGGAACCTTAGAGGGACAGTAGCGCATTTGA
GAACTGTATCTATACTGACGGGAGATTCTACTGGCAAGATTGCTAGAAGT
TTCTGTTATCTAATGTCTGGAGATAGTGAATATTGATAACAAGTACAGTT
TTGCAATCCGGGAGTCTTCATATATTGTAGGCAGCTTCAATTGTGAAAAA
TTACATTCTGTGCATTAGTAGTTTGTCTTGGAAGATGGTACTGATATATT
ATCTAATATTGNTAGCATGTTTATTATCAAACATAAATTTGACCAAAAAA
AAAAAAAA
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