EY756205

Overview
NameEY756205
Unique NameEY756205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756205 vs. ExPASy Swiss-Prot
Match: RS11_HYPBU (30S ribosomal protein S11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps11p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   12 AAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 212
            AAMLAA   +Q+  + GI ALHIK+RA            AQ+A+RALAR+G  IGRIEDVTP+P D+
Sbjct:   55 AAMLAASRAAQQAMDRGIMALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPLPHDT 121          
BLAST of EY756205 vs. ExPASy Swiss-Prot
Match: RS11_THESM (30S ribosomal protein S11P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps11p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   12 AAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 209
            AAM+AA+  ++   E GI  +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D
Sbjct:   61 AAMIAARRAAEEAMEKGINGVHIKVRAPGGSKSKNPGPGAQAAIRALARAGLRIGRVEDVTPIPHD 126          
BLAST of EY756205 vs. ExPASy Swiss-Prot
Match: RS11_STAMF (30S ribosomal protein S11P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 3
Query:   12 AAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 212
            AAM+AA   +    + GITALHIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+
Sbjct:   55 AAMIAASRAAAEAMDKGITALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDT 121          
BLAST of EY756205 vs. ExPASy Swiss-Prot
Match: RS11_METTH (30S ribosomal protein S11P OS=Methanobacterium thermoautotrophicum GN=rps11p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   12 AAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 209
            AAM AA   +   KE GI  LHIK+RA            AQ+A+RALAR+GM+IG+IEDVTPIP D
Sbjct:   52 AAMEAATRAADDAKEKGIVGLHIKVRAPGGNGPRTPGPGAQAAIRALARAGMRIGKIEDVTPIPHD 117          
BLAST of EY756205 vs. ExPASy Swiss-Prot
Match: RS11_METB6 (30S ribosomal protein S11P OS=Methanoregula boonei (strain 6A8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   12 AAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 212
            AAM  A +V+   +E GI  +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:   54 AAMQMAANVAAIAREKGIVGVHVKVRAPGQGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 120          
BLAST of EY756205 vs. ExPASy Swiss-Prot
Match: RS11_METST (30S ribosomal protein S11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps11p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   12 AAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 209
            AAM AA  V+   KE GI  LHIK+RA            AQ+ +RALAR+G+KIG+IEDVTPIP D
Sbjct:   52 AAMEAANRVADDIKEKGIAGLHIKVRASGGNGPRTPGPGAQATIRALARAGIKIGKIEDVTPIPHD 117          
The following BLAST results are available for this feature:
BLAST of EY756205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RS11_HYPBU4.240e-1153.7330S ribosomal protein S11P OS=Hyperthermus butylic... [more]
RS11_THESM5.537e-1150.0030S ribosomal protein S11P OS=Thermococcus sibiric... [more]
RS11_STAMF5.537e-1153.7330S ribosomal protein S11P OS=Staphylothermus mari... [more]
RS11_METTH7.232e-1154.5530S ribosomal protein S11P OS=Methanobacterium the... [more]
RS11_METB67.232e-1150.7530S ribosomal protein S11P OS=Methanoregula boonei... [more]
RS11_METST9.445e-1154.5530S ribosomal protein S11P OS=Methanosphaera stadt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756205 ID=EY756205; Name=EY756205; organism=Citrus sinensis; type=EST; length=503bp
CCACGCGTCCGGCAGCTATGCTTGCAGCACAAGATGTTTCTCAACGATGC
AAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTCCGGGCTACTGGGGG
TAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTCAGCACTTAGAGCTC
TTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGGATGTGACTCCAATT
CCCACCGACAGTACCCGCAGAAAGGGTGGTACAAGGGGTAGAAGGTTGTA
ATTCTTTTCCTCATACCCATCCATAACGTTCAAGATGATGCCGTGGTTGC
CGAGAGTTTCACTCTCTTCTGTTAGATGCAAGACTTATTTCCCAATTTTG
TTGTTTGGAATGTCTGTAGTCTCAGATTCCTTTGTGTTAGCCTTTCCGAT
CAATTAAGTTTATACAGTGGCAAGACTAATCATTTCTCCATGAGTTTCTG
AATTTTATTGTTTATCTACATTTACAAGTATTGTGTTAAAAAAAAAAAAA
AAA
back to top