EY756200

Overview
NameEY756200
Unique NameEY756200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:425..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.543e-22
Identity = 59/113 (52.21%), Postives = 68/113 (60.18%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+       K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:  122 PGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.239e-22
Identity = 58/113 (51.33%), Postives = 69/113 (61.06%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      +Y KLLA R+KE +E+R E +AK+R
Sbjct:  122 PGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.106e-21
Identity = 63/115 (54.78%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 353
            PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   RR    + GKK  SKAPKIQRLVTP+ L                      EY KLLA R+KE +ER+ E   +KRS
Sbjct:  122 PGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKME---RKRS 231          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 58/113 (51.33%), Postives = 67/113 (59.29%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R KE +E+R E +AK+R
Sbjct:  122 PGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRR 232          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 60/118 (50.85%), Postives = 69/118 (58.47%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 353
            PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ L                      +Y KLLA R KE + RR E L ++RS
Sbjct:  122 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRS 237          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 58/118 (49.15%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 353
            PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+ L                      +Y KLLA R KE + RR E + ++RS
Sbjct:  122 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRS 237          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.849e-20
Identity = 59/114 (51.75%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+ L                      +Y KLLA R KE + +R E  AK+R
Sbjct:  122 PGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAADYAKLLAQRKKESKAKREE--AKRR 231          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 58/114 (50.88%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+ L                      +Y KLL  R KE + +R E  AK+R
Sbjct:  122 PGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREE--AKRR 231          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.180e-18
Identity = 54/115 (46.96%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   15 GLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 359
            GLT    PR  GPKRA+ IRKLF LSKEDDVR+YV   RR  TTKSGK  +KAPKIQRL+TP  L                      EY +LLA R+ E++  ++E   ++ S L
Sbjct:  123 GLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 53/114 (46.49%), Postives = 66/114 (57.89%), Query Frame = 3
Query:   12 PGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 350
            PGLTDT  PR  GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL+TP+ L                      EY K+L  R +++R RR   L+  R
Sbjct:  122 PGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMR 233          
The following BLAST results are available for this feature:
BLAST of EY756200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_BOVIN5.543e-2252.2140S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_CHICK7.239e-2251.3340S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_APLCA2.106e-2154.7840S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_XENLA3.593e-2151.3340S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_SPOFR8.004e-2150.8540S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_MANSE6.775e-2049.1540S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_GLOMM8.849e-2051.7540S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_DROME1.971e-1950.8840S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_YARLI2.180e-1846.9640S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6_AEDAE2.847e-1846.4940S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756200 ID=EY756200; Name=EY756200; organism=Citrus sinensis; type=EST; length=579bp
CCACGCGTCCGCCTGGACTTACCGATACAGAAAAGCCCAGAATGAGAGGT
CCCAAGAGAGCATCGAAGATCAGGAAGTTGTTCAACCTTTCCAAGGAGGA
TGATGTTAGGAAGTACGTTAACACCTATCGTAGGACCTTCACAACAAAAT
CTGGTAAGAAGGTTAGCAAGGCACCGAAAATTCAGAGGTTGGTAACTCCT
TTGACTCTGCAAAGGAAGCGTGCAAGAATTGCAGAAAAGAAGCAGAGAAT
TGCCAAGGCCAAGGCTGAAGCAGCGGAATACCAGAAGCTCCTTGCTACCA
GGTTGAAGGAGCAGCGTGAACGCCGCAGTGAGAGTTTGGCAAAGAAGAGG
TCTAGGCTCTCTGCTGCTTCAAAGCCATCTATTGCAGCTTAGATTAGATT
CTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTGTCCTGCTGAATTCT
TTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGACTTAATATCCCATGG
AATGTGATACAATAACCTTCATAGACACTTTTCGATTTTGTTTACTTAAA
TTGGTTGATGCTCAGCTATTTTCTTTAAA
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