EY756200

Overview
NameEY756200
Unique NameEY756200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:425..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 49/104 (47.12%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   15 GLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 323
            G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:  126 GVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 49/104 (47.12%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   15 GLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 323
            G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP                         EY +L+A+  +  R+R
Sbjct:  126 GVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 50/112 (44.64%), Postives = 60/112 (53.57%), Query Frame = 3
Query:   15 GLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQ----RERRSESL 338
            G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  L                      EY +LLA RL E+    R+RR+ SL
Sbjct:  123 GVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAERKAEVRKRRASSL 231          
BLAST of EY756200 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 3
Query:   15 GLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 359
            G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E   ++ S L
Sbjct:  123 GITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSL 234          
The following BLAST results are available for this feature:
BLAST of EY756200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_LEIMA2.494e-1447.1240S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN2.494e-1447.1240S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_KLUMA1.238e-1344.6440S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]
RS6_ASHGO2.757e-1339.1340S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756200 ID=EY756200; Name=EY756200; organism=Citrus sinensis; type=EST; length=579bp
CCACGCGTCCGCCTGGACTTACCGATACAGAAAAGCCCAGAATGAGAGGT
CCCAAGAGAGCATCGAAGATCAGGAAGTTGTTCAACCTTTCCAAGGAGGA
TGATGTTAGGAAGTACGTTAACACCTATCGTAGGACCTTCACAACAAAAT
CTGGTAAGAAGGTTAGCAAGGCACCGAAAATTCAGAGGTTGGTAACTCCT
TTGACTCTGCAAAGGAAGCGTGCAAGAATTGCAGAAAAGAAGCAGAGAAT
TGCCAAGGCCAAGGCTGAAGCAGCGGAATACCAGAAGCTCCTTGCTACCA
GGTTGAAGGAGCAGCGTGAACGCCGCAGTGAGAGTTTGGCAAAGAAGAGG
TCTAGGCTCTCTGCTGCTTCAAAGCCATCTATTGCAGCTTAGATTAGATT
CTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTGTCCTGCTGAATTCT
TTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGACTTAATATCCCATGG
AATGTGATACAATAACCTTCATAGACACTTTTCGATTTTGTTTACTTAAA
TTGGTTGATGCTCAGCTATTTTCTTTAAA
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