EY756182

Overview
NameEY756182
Unique NameEY756182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12994 contig Csv1_Contig12994:407..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH102_RHILO (10 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            P   R+LV +I    KT  GI++P+    K   G+V+A+GPGARD +GK  P+ VK GD +L  ++ G E+KL  +   + ++  ++G +
Sbjct:    5 PLHDRILVRRIEAEEKTAGGIIIPDTAKEKPQEGEVIAIGPGARDESGKLTPLDVKAGDRILFGKWSGTEIKLNGEDLLIMKESDVMGVI 94          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH104_RHILO (10 kDa chaperonin 4 OS=Rhizobium loti GN=groS4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   59 MAK-RLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            MAK +  P   RV+V ++   SKT  GI++P+    K   G+++AVG GARD +GK +P+ VK GD +L  ++ G EVKL  +   + ++  I+G +
Sbjct:    1 MAKSKFRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLVPLDVKAGDRILFGKWSGTEVKLNGEDLLIMKESDIMGII 97          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 42/89 (47.19%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   71 LIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESIL 334
            L P   RVLV+      KT  GI LP+    K   G+VVAVGPG R+  GK IP+ +K GD VL  +Y G EVKLG  +Y L  +  IL
Sbjct:   11 LKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDIL 99          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 42/89 (47.19%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   71 LIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESIL 334
            L P   RVLV+      KT  GI LP+    K   G+VVAVGPG R+  GK IP+ +K GD VL  +Y G EVKLG  +Y L  +  IL
Sbjct:   11 LKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDIL 99          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_METFK (10 kDa chaperonin OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 337
            P   RV+V+++    KT SGI++P+  + K   G+V+AVGPG +D NGK IP+ VK GD VL  +Y G  VK+  ++  +  ++ ILG
Sbjct:    5 PLQDRVIVKRLEEERKTASGIVIPDTAAEKPDQGEVIAVGPGKKDDNGKSIPLDVKVGDKVLFGKYAGQAVKVNGEEVLVLREDDILG 92          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_RHOCS (10 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 2
Query:   68 RLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            R  P   RV+V+++    KT  GI++P+    K   G+++AVG GARD +GK I + VK GD VL  ++ G EVK+   +Y + ++  I+G L
Sbjct:    2 RFRPLHDRVVVKRVESEQKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLIALDVKVGDRVLFGKWSGTEVKIDGVEYLIMKESDIMGVL 94          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 2
Query:   68 RLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            +L P   R++V+++   +KT  GI +PE    K   G+VVAVG G R  +GK +P+ VK GD VL  +Y G EVK+  + Y +  ++ ILG +
Sbjct:    2 KLRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVI 94          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_BRUO2 (10 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 337
            P   RV+V ++   +KT  GI++P+    K   G+VVA G GARD  GK +P+ VK GD VL  ++ G EVK+G +   + ++  ILG
Sbjct:    8 PLHGRVIVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH10_AQUAE (10 kDa chaperonin OS=Aquifex aeolicus GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   68 RLIPAFSRVLVEKIIPPS-KTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHDH 352
            +L P + +++VE++     KT SGI++P+    K   GKVVAVGPG    NG+  P+SVKEGD VL  +Y G EV++  K Y +  ++ +L  + D+
Sbjct:    2 KLRPLYDKIVVERLEEKEEKTPSGIIIPDTAKEKPQLGKVVAVGPGKLLDNGELKPLSVKEGDVVLFNKYAGNEVEIEGKIYLVMSEDEVLAVVEDY 98          
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH103_BRAJA (10 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groS3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = 2
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTSKLIS-GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 349
            P   RV+V++I    KT  GI++P+   +  S G+V+AVGPG  D +GK IP+ ++ GD VL  ++ G EVK+  +   + ++  ++G L D
Sbjct:    5 PLHDRVVVKRIDAEEKTAGGIIIPDTAKEKPSQGEVIAVGPGGHDDSGKLIPIDIEVGDRVLFGKWSGTEVKIDGQDLLIMKESDVMGVLTD 96          
The following BLAST results are available for this feature:
BLAST of EY756182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CH102_RHILO4.601e-1236.6710 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=... [more]
CH104_RHILO6.009e-1238.1410 kDa chaperonin 4 OS=Rhizobium loti GN=groS4 PE=... [more]
CH10_SYNJB7.848e-1247.1910 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA7.848e-1247.1910 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]
CH10_METFK7.848e-1242.0510 kDa chaperonin OS=Methylobacillus flagellatus (... [more]
CH10_RHOCS1.025e-1138.7110 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH10_GEOSF1.025e-1139.7810 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_BRUO21.025e-1140.9110 kDa chaperonin OS=Brucella ovis (strain ATCC 25... [more]
CH10_AQUAE1.025e-1140.2110 kDa chaperonin OS=Aquifex aeolicus GN=groS PE=3... [more]
CH103_BRAJA1.025e-1136.9610 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-F01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756182 ID=EY756182; Name=EY756182; organism=Citrus sinensis; type=EST; length=619bp
CCACGCGTCCGGAAGAAAGTTTTGGTGAAGTCCCCTCCTGTTTGTTCGTG
AAGAGAAAATGGCAAAGAGATTGATTCCAGCATTCAGTCGCGTTTTGGTT
GAAAAAATAATCCCTCCTTCCAAAACCAACTCCGGAATCTTACTTCCTGA
GAAAACAAGCAAGCTGATTTCTGGAAAAGTTGTTGCTGTGGGTCCTGGAG
CTCGTGATGTCAATGGAAAGTTTATTCCTGTAAGTGTGAAGGAAGGAGAT
ACTGTTCTTTTGCCCGAGTATGGGGGGGCTGAAGTTAAGCTTGGTGATAA
AAAGTACCATCTGTACGAGGATGAGTCCATCCTGGGAACACTTCATGACC
ATTGAAAAATATTGCTCTTTGATTGCATCTAGTAATGGCAGCTTTAATAA
TTCAAAGTTGTCGGCTGGAGCAGCCTTGTGACTGAATATTAGTGCTATAT
ACATTTAAACTTATTTAGGACTTGAGAAGTGTTTTCATATAACTTGATGT
ACTAGTTCAGAAACTAATTTGCGACTGAGAATTGCTAAGAATTGCTAAGG
GCTGCAGTTTATAGCGCATTATTCGAAGTGNNCCTTGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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