EY756182

Overview
NameEY756182
Unique NameEY756182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12994 contig Csv1_Contig12994:407..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH103_RHIME (10 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 337
            P   RV++ +    +++  GI++P+    K   G+V+AVGPG+RD +GK IP+ VK GDT+L  ++ G EVK+  +   + ++  I+G
Sbjct:    5 PLLDRVVIRRAEGNTQSKGGIIIPDTAKEKPQEGEVIAVGPGSRDESGKLIPLDVKIGDTILFGKWSGTEVKIDGEDLLIMKESDIMG 92
[Close]
BLAST of EY756182 vs. ExPASy Swiss-Prot
Match: CH101_BRAJA (10 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groS1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 2 
Query:   77 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 343
            P   RVLV +I    KT  GI++P+    K   G+++A G G R+  G+ IP+ VK GD VL  ++ G EVK+  + Y + ++  +LG +
Sbjct:    5 PLHDRVLVRRIDAEEKTAGGIIIPDTAKEKPQEGEIIAAGSGGRNEQGQLIPIDVKPGDRVLFGKWSGTEVKIDGQDYLIMKESDLLGVV 94
The following BLAST results are available for this feature:
BLAST of EY756182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CH103_RHIME6.644e-1136.3610 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3... [more]
CH101_BRAJA8.677e-1136.6710 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-F01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756182 ID=EY756182; Name=EY756182; organism=Citrus sinensis; type=EST; length=619bp
CCACGCGTCCGGAAGAAAGTTTTGGTGAAGTCCCCTCCTGTTTGTTCGTG
AAGAGAAAATGGCAAAGAGATTGATTCCAGCATTCAGTCGCGTTTTGGTT
GAAAAAATAATCCCTCCTTCCAAAACCAACTCCGGAATCTTACTTCCTGA
GAAAACAAGCAAGCTGATTTCTGGAAAAGTTGTTGCTGTGGGTCCTGGAG
CTCGTGATGTCAATGGAAAGTTTATTCCTGTAAGTGTGAAGGAAGGAGAT
ACTGTTCTTTTGCCCGAGTATGGGGGGGCTGAAGTTAAGCTTGGTGATAA
AAAGTACCATCTGTACGAGGATGAGTCCATCCTGGGAACACTTCATGACC
ATTGAAAAATATTGCTCTTTGATTGCATCTAGTAATGGCAGCTTTAATAA
TTCAAAGTTGTCGGCTGGAGCAGCCTTGTGACTGAATATTAGTGCTATAT
ACATTTAAACTTATTTAGGACTTGAGAAGTGTTTTCATATAACTTGATGT
ACTAGTTCAGAAACTAATTTGCGACTGAGAATTGCTAAGAATTGCTAAGG
GCTGCAGTTTATAGCGCATTATTCGAAGTGNNCCTTGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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