EY756169 | Citrus Genome Database

Overview


Name	EY756169
Unique Name	EY756169
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	439

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13310	contig	Csv1_Contig13310:1..439.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_OLILU (Histone H4 OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.920e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 8.393e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLKIFL+NVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 8.393e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLKIFL+NVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 8.393e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLKIFL+NVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_XENTR (Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_XENLA (Histone H4 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_XENBO (Histone H4 OS=Xenopus borealis PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_URECA (Histone H4 OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_TIGCA (Histone H4 OS=Tigriopus californicus GN=His4 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756169 vs. ExPASy Swiss-Prot
Match: H4_RHYAM (Histone H4 OS=Rhynchosciara americana GN=His4 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 2

Query:    5 ASGGGFTRISGLIYEETRGVLKIFLDNVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 199
            A  GG  RISGLIYEETRGVLK+FL+NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of EY756169 vs. ExPASy Swiss-Prot

BLAST of EY756169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_OLILU	4.920e-27	90.77	Histone H4 OS=Olisthodiscus luteus PE=1 SV=2	[more]
H4_SOLLC	8.393e-27	90.77	Histone H4 OS=Solanum lycopersicum PE=3 SV=2	[more]
H4_SOLCH	8.393e-27	90.77	Histone H4 OS=Solanum chacoense PE=3 SV=3	[more]
H4_CAPAN	8.393e-27	90.77	Histone H4 OS=Capsicum annuum PE=3 SV=3	[more]
H4_XENTR	1.096e-26	89.23	Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 P...	[more]
H4_XENLA	1.096e-26	89.23	Histone H4 OS=Xenopus laevis PE=1 SV=2	[more]
H4_XENBO	1.096e-26	89.23	Histone H4 OS=Xenopus borealis PE=3 SV=2	[more]
H4_URECA	1.096e-26	89.23	Histone H4 OS=Urechis caupo PE=3 SV=2	[more]
H4_TIGCA	1.096e-26	89.23	Histone H4 OS=Tigriopus californicus GN=His4 PE=3 ...	[more]
H4_RHYAM	1.096e-26	89.23	Histone H4 OS=Rhynchosciara americana GN=His4 PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-005-D12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756169 ID=EY756169; Name=EY756169; organism=Citrus sinensis; type=EST; length=439bp
CCACGCGTCCGGAGGAGGCTTTACGAGAATCAGCGGTCTCATCTACGAGG
AGACACGCGGCGTCCTCAAGATCTTCTTGGACAACGTCATTCGCGATGCT
GTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGCCATGGATGT
CGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTT
GATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGATTTTCCTTTTTTCCTG
TAAATCAGTGAATGTGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCA
ACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGG
TGTTTTCATCTTTGCAATGAGAATCTAGTTGTTTACTTCNNAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA