EY756141

Overview
NameEY756141
Unique NameEY756141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.357e-22
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 2
Query:   74 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHV 562
            E +EIPEGV+V +   +++V+GP+G+L R  K+  +        E GK  + +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +   +  IE  NFLGEK  RR ++L GVTV    KV+  E+ ++G D E V ++AA I Q   +
Sbjct:    9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIFT----EDGK--VVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRI 160          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.268e-21
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 2
Query:   74 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHV 562
            E +EIPEGV+V +    ++V+GP+G+L R F    +        E G   +  D  F  RK  A  RT  +H++N+I GVT+G+ YK++ VY+HFPI+  +   +  IE  NFLGEK  R+ ++L GVTV    KV+  E+I++G D E V ++AA I Q   +
Sbjct:    9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRI 160          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.817e-21
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 2
Query:   74 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHV 562
            E +EIPEGV+V +    ++V+GP+G++ +      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +   +  IE  NFLGEK  RR ++L GVTV    KVK  E+I++G D E   ++AA I Q   +
Sbjct:    9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRI 160          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.073e-20
Identity = 59/170 (34.71%), Postives = 97/170 (57.06%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDG-----ETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            +E+P+GV V ++   +  +G +G++SR F+   +   + TDG     ETGK           ++T A + T  SH++N++TGV++GY Y M+ VYAHFPI   +   DK + I NFLGE+K R   ++    V ++ DKV    +L G + E + ++AA I Q C ++ +
Sbjct:    9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGGKVIVETGK---------DDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKR 162          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.078e-20
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            L  E +EIPE V V++N   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +
Sbjct:    6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIST----EDGK--VVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGR 163          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.078e-20
Identity = 63/169 (37.28%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            L  E +EIPE V V+IN   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +
Sbjct:    6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIST----EDGK--VVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGR 163          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.085e-20
Identity = 55/162 (33.95%), Postives = 95/162 (58.64%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVK 565
            ++IP+GV V+I+ + + V+GP+G+LSR   + +++       +    ++ I +    ++  A + T  +H++N+I GVT G+ Y+MR VY+HFPI   +  AD  + I NFLGE+K R   ++  V V   +  KDE+++ G D E V ++ A I Q   V+
Sbjct:    9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVR 159          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 61/169 (36.09%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            L  E +EIPE V V+IN   + V+    +L R   +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +++++ G + E V ++AA I Q   VK +
Sbjct:    6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIST----EDGK--VVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGR 163          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 46/170 (27.06%), Postives = 100/170 (58.82%), Query Frame = 2
Query:   53 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHV 562
            +K     E ++IP+ VKV +   +++V+GP+G++ ++F +       + +G     ++ ++  F  R+  A + + ++H++N+ITG   GYRY ++ +  HFPI+  ++  +  +++ N +GEK +RR ++L GV V       ++++++G+DI  V+++AA I     +
Sbjct:    4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKI 163          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNK 571
            L  E + IP+GV V I+  +  V+GP+ +LSR F H  +   +  D      ++ ++  F  +K  A I T  +H+ N+ITGVT+G+RY+M+ VYAHFP++  +A  DK + I NFLGE+  R    +    V    +VK DE+ + G + E V ++ A I Q   +K +
Sbjct:    6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVA-GDK-VVIENFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGR 162          
The following BLAST results are available for this feature:
BLAST of EY756141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_THEGJ4.357e-2238.4150S ribosomal protein L6P OS=Thermococcus gammatol... [more]
RL6_PYRFU1.268e-2139.6350S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_PYRHO4.817e-2139.0250S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_UNCMA1.073e-2034.7150S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_METM74.078e-2036.6950S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM54.078e-2037.2850S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METTP9.085e-2033.9550S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_METMP2.024e-1936.0950S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_SULAC3.452e-1927.0650S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]
RL6_METTH4.509e-1935.8850S ribosomal protein L6P OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756141 ID=EY756141; Name=EY756141; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGGGAAGGAGCTGAGACGCAGCAGAGGCAGAGCAGCTTTCA
TCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTG
AAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAA
GCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTG
ATGGGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCT
CGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCT
CATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACG
CTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAG
ATCCGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGA
CGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTG
ATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAG
AAATGCCATGTGAAGAATAAGATATCANGAAATTCTTAGACGGGATCTAT
GTCAGTGAGAAGGGGCACATTGTTGGAGAGGATTANGTAGCTTTCAAATT
TTATGTCACATTATTATCATGAAATTGGTATCAATCTTTGCTCTTTTGCC
CTGNGNTGGGGGAAGTCCTTTATTTTTTTTCGTTGGGATTTTGGTATTAG
AGAGTTTTGATTTCTGCTTCACTCATGTACCTTTGTTCCATATGGATCCA
ATGGATTTATACCTAAAAAAAAAAAAAAAAAAAAAAAGGGCGGGCGCTCA
AAGGATCCAACTTACGTAACCGGGATGCAACGCATAACTCTTCATAAGGG
CCCCAAAATCATTCCCTTGCCGCC
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