EY756141

Overview
NameEY756141
Unique NameEY756141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 58/195 (29.74%), Postives = 103/195 (52.82%), Query Frame = 2
Query:   53 MKTILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALIN--QKCHVKNKISXNS*TGSMSVRRG 616
            M+ + S E +EIP+GV V I        I++V+GP G++++ FK+  +   L  DG     ++ ++ +   ++  A + T    ++N+  GVT+G+RYK++ +Y HFP+   +      + I NFLG K    + +  GV V    K K++++++G D ELVS  AA +    + H   + S +   G + V  G
Sbjct:    1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQ-DG-----KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQG--NQLVIENFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAVQAATELHGDERPSPHGREGGLGVVDG 185          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVK 565
            + IPEGV V     ++   GP+G  +R   +  ++       E     + +D+    +K  A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +    K   I NFLGEKK R   +L   +V  S    DE+I+ G + E V ++AA I QK  +K
Sbjct:    9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKVNG--KKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIK 159          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELI-LDGNDIELVSRSAALINQKCHVKNK 571
            ++   +EIPE V  +++   + VEGP G ++R   + ++   +  D +     ++ D      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+   +  IE  NFLGEK  RR  +     V    ++  E++ L G   E V ++AA I Q   V +K
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSVDEDADADAVVIETDET--DAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRRTPIRGDTNV----QIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDK 162          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 56/192 (29.17%), Postives = 97/192 (50.52%), Query Frame = 2
Query:   20 LRRSRGRAAFIMKT---ILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            +R +RG   F + T   +     +E+PE V++ I         ++  GP+G+ +R  K+  +        E G  ++++      +K  A + T   H++NLITGV +G+ Y ++ VYAHFPI   +   +  IE  NF+GEK  RR +++    V  S +   ++ + G DIE   ++AA + Q   +K K
Sbjct:    1 MRENRGWEVFSLLTSTEVYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRK 181          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.358e-15
Identity = 51/164 (31.10%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            +EIP+ V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  RR ++     V+  D   +E+ L G  IE V ++AA I Q   V +K
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEG--EEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDK 158          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.316e-15
Identity = 53/167 (31.74%), Postives = 94/167 (56.29%), Query Frame = 2
Query:   74 ETMEIPEGVKVK-INAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            E +EIPE V ++ IN + + V+    +L R   + ++        +    ++ +++ +  +K +A I T  SH++N+ITGV++G+ YKM+  YAHFP+  S+      + I NFLGEK  R+  +++GV V  S    +++I+ G D E   ++AA I Q   V+ +
Sbjct:    9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDVVI------KKEDNKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKG--NEVIIDNFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGR 164          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.159e-15
Identity = 46/165 (27.88%), Postives = 85/165 (51.52%), Query Frame = 2
Query:   86 IPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKK--VRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            IPE VKV     I++V GP+G++ R F      +H +        ++ ++ +F +R+    I T  SH++N++ GV   + Y+++  Y HFP+   +      + + NFLGEK   ++ +  LD V V +  +K + E++++  D E     A++I Q     +K
Sbjct:   12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEG--NKLIVENFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHK 168          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.800e-15
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 2
Query:   80 MEIPEGVKVKINAK-IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVK 565
            +EIPEG+ V  +   +    GP G + R   +  +  ++  DGE     +++DA    ++  A + T  SH++NL+ GV +G+  KM  +YAHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+ + G + E V ++AA I QK  +K
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVR-DGE-----VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKVDG--KTLIIGNFLGEKKPRIAKILGETKVKVSG---NEVTVSGINKEDVGQTAANIEQKTKIK 160          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 55/164 (33.54%), Postives = 85/164 (51.83%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            +EIP+ V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   D  I I NFLGEK  R+  +    +V   +   +EL + G  IE V ++AA I Q   V +K
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTPVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDK 157          
BLAST of EY756141 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 46/175 (26.29%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   62 ILSSETMEIPEGVKVKINAKI-----IEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNK 571
            I+  E ++I + V+++I+ +      + V+GP+G++++ F +   D +L  + +     + I A   +R+  A +    ++++N+  GVT+G+ YK++ VY+HFP    +   +  + I NF+GE   R  E++D        + +D +I+ G D E V ++AA + Q  ++K++
Sbjct:   17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYP--DVYLWVEDD----EVVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQD-IIVRGIDKEAVGQTAANLEQATYIKDR 184          
The following BLAST results are available for this feature:
BLAST of EY756141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_PYRAE6.094e-1629.7450S ribosomal protein L6P OS=Pyrobaculum aerophilu... [more]
RL6_METBU6.094e-1632.7250S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_HALWD7.959e-1633.5350S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_ARCFU7.959e-1629.1750S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_HALSA1.358e-1531.1050S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_META32.316e-1531.7450S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_NANEQ5.159e-1527.8850S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_METBF8.800e-1533.1350S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_NATPD1.501e-1433.5450S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_METKA8.236e-1326.2950S ribosomal protein L6P OS=Methanopyrus kandleri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756141 ID=EY756141; Name=EY756141; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGGGAAGGAGCTGAGACGCAGCAGAGGCAGAGCAGCTTTCA
TCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTG
AAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAA
GCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTG
ATGGGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCT
CGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCT
CATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACG
CTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAG
ATCCGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGA
CGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTG
ATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAG
AAATGCCATGTGAAGAATAAGATATCANGAAATTCTTAGACGGGATCTAT
GTCAGTGAGAAGGGGCACATTGTTGGAGAGGATTANGTAGCTTTCAAATT
TTATGTCACATTATTATCATGAAATTGGTATCAATCTTTGCTCTTTTGCC
CTGNGNTGGGGGAAGTCCTTTATTTTTTTTCGTTGGGATTTTGGTATTAG
AGAGTTTTGATTTCTGCTTCACTCATGTACCTTTGTTCCATATGGATCCA
ATGGATTTATACCTAAAAAAAAAAAAAAAAAAAAAAAGGGCGGGCGCTCA
AAGGATCCAACTTACGTAACCGGGATGCAACGCATAACTCTTCATAAGGG
CCCCAAAATCATTCCCTTGCCGCC
back to top