EY756133

Overview
NameEY756133
Unique NameEY756133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756133_ssr601 microsatellite EY756133_ssr601:601..610. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756133_ssr313 microsatellite EY756133_ssr313:313..324. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1382 contig Csv1_Contig1382:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 3.534e-34
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 453
            ++V+RSVKAGLQFPVGRIGR+LKKGRY+QRVGSGAP                  GNAA+DNKK +IIPRH+ LAVRND+ELG+LL GVTIA GGV+PNIN VLLPKK+
Sbjct:   11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.534e-34
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 453
            ++V+RSVKAGLQFPVGRIGR+LKKGRY+QRVGSGAP                  GNAA+DNKK +IIPRH+ LAVRND+ELG+LL GVTIA GGV+PNIN VLLPKK+
Sbjct:   11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.029e-34
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            +SVS+SVKAGLQFPVGRI R+LKKGRY+ R GSGAP                  GNAARDNKK +I PRH+ LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK+  S
Sbjct:   24 KSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTAS 134          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.029e-34
Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTK 456
            ++VSRS KAGLQFPVGRI R+LKKG+Y++R+G+GAP                  GNAARDNKK +I+PRH+QLA+RNDEELGKLL  VTIASGGVLPNI+ VLLPKK+K
Sbjct:   13 KAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTK 456
            ++VSRS KAGLQFPVGRI R+LKKG+Y++R+G+GAP                  GNAARDNKK +I+PRH+QLA+RNDEELGKLL  VTIASGGVLPNI+ VLLPKK+K
Sbjct:   13 KAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 2.291e-33
Identity = 72/107 (67.29%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKK 450
            ++V+RSVKAGLQFPVGRIGR+LKKGRY+Q VGSGAP                  GNAA+DNKK +IIPRH+ LAVRND+ELG+LL GVTIA GGV+PNIN VLLPKK
Sbjct:   11 KAVTRSVKAGLQFPVGRIGRYLKKGRYAQAVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKK 117          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 8.706e-33
Identity = 68/111 (61.26%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            + VSRS +AGLQFPVGRI RFLK GRYS+R+G+GAP                  GNAA+DNKK +I+PRH+ LA+RNDEEL KL+   TIA GGVLPNINP+LLP KTK+S
Sbjct:   18 KQVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKKS 128          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.137e-32
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            SRS +AGLQFPVGR+ RFL+KG Y+QRVG+GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL+GVTIA GGVLPNI  VLLPKKT ++
Sbjct:   17 SRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSKA 124          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 71/108 (65.74%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 453
            +SVSRS KAGLQFPVGRI RFLK G+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL KLL  VTIA+GGVLPNI+ VLLPKK+
Sbjct:   17 KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124          
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            + VSRS +AGLQFPVGRI RFLK GRYS+R+G+GAP                  GNAA+DNKK +I+PRH+ LA+RNDEEL KL+   TIA GGVLPNINP+LLP KTK++
Sbjct:   18 KQVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKKT 128          
The following BLAST results are available for this feature:
BLAST of EY756133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A5_WHEAT3.534e-3467.59Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A1_WHEAT3.534e-3467.59Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A5_ARATH6.029e-3467.57Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A3_VOLCA6.029e-3465.14Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A4_VOLCA1.028e-3365.14Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A6_WHEAT2.291e-3367.29Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2A1_TETTH8.706e-3361.26Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2AL_STRPU1.137e-3265.74Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2AX_PICAB1.939e-3265.74Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2A1_TETPY1.939e-3260.36Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756133 ID=EY756133; Name=EY756133; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGCCACGAAACCTGTCACTTTGTTGAAGTAAATCTTTCTGC
ATTTTGAGGTTGGGTCATGGATACACCAGTCAAAGTGAAGAAGGGAGCCG
GCGGAAGGAAGGGAGGAGGACCGAAAAAGCAATCCGTTTCCAGGTCTGTG
AAAGCGGGGCTCCAATTCCCAGTAGGTAGAATCGGGCGTTTCTTGAAGAA
GGGAAGATATTCGCAGCGTGTGGGTAGCGGTGCTCCAGTTTACATGGCCG
CTGTGCTCGAGTACCTAGCTGCTGAAGTGTTGGAGTTGGCTGGGAACGCG
GCACGTGACAACAAGAAGAAGAAGATCATCCCAAGGCACGTGCAATTAGC
GGTGAGGAATGATGAGGAGTTGGGGAAATTACTCACAGGTGTGACGATTG
CAAGCGGCGGCGTTTTGCCTAATATCAACCCAGTGCTGTTGCCAAAGAAG
ACTAAGGAAAGTGTTGCGAAGGAGCCCAAATCTCCATCCAAGGCTACCAA
GTCCCCAAAGAAAGCCTAGATTAGTTGTATCTTGAGTGCTACCGCATGTA
ATGTTCAGTCTAGGTTTTCCCATTTTGCTCTTTTTTCTTTTGATATATGC
TGTGTGTGTGTTGTTAGCATAGCCTCGGCCTGTTAAATGAATCGAAACAA
GTTGTTTTTTGTAACTATAAACCCCTTTCATATGGGGATTTAATTATAGT
TTATAAATCTTCTACAAAAAAAAAAAAAAAAAAAAGGGCGGCCGCCCTTT
TTTTTTTTTTTTTTTTTTTTGGATAATCTCATCCAGTACACATAGTTAAA
GATTAGCAAATGCAATCTCTGGTTACATAAAAAAAAAACTCATAACCATT
TTTCTTTTTGGCCTTTTTACCGATAC
back to top