EY756133

Overview
NameEY756133
Unique NameEY756133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756133_ssr601 microsatellite EY756133_ssr601:601..610. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756133_ssr313 microsatellite EY756133_ssr313:313..324. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1382 contig Csv1_Contig1382:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            SRS +AGLQFPVGRI R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT+++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKA 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            SRS +AGLQFPVGRI R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT+++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKA 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            SRS +AGLQFPVGRI R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT+++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKA 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            +S SRS +AGLQFPVGRI R L+KG Y++RVG+GAP                  GNAARDNKK +I+PRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT++
Sbjct:   13 KSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            ++ +RS KAGLQFPVGRI RFLKKG+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT  S
Sbjct:   15 KATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGAS 125
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.642e-31
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            +RS +AGLQFPVGR+ RFL+KG Y++RVG GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT +S
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.642e-31
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            +RS +AGLQFPVGR+ RFL+KG Y++RVG GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT +S
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.144e-31
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            SRS +AGLQFPVGR+ RFL+KG Y+QRVG+GAP                  GNAA DNKK +IIPRH+QLA+RNDEEL KLL GVTIA GGVLPNI  VLLPKKT +S
Sbjct:    3 SRSSRAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAKS 110
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_TIGCA (Histone H2A OS=Tigriopus californicus GN=His2A PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.800e-31
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            SRS +AGLQFPVGRI R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT++
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_RHYAM (Histone H2A OS=Rhynchosciara americana GN=His2A PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.800e-31
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            SRS +AGLQFPVGRI R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT++
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
The following BLAST results are available for this feature:
BLAST of EY756133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_MYTED1.257e-3163.89Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH1.257e-3163.89Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA1.257e-3163.89Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2A_LITVA1.257e-3162.73Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A1_ARATH1.257e-3162.16Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A_STRPU1.642e-3164.81Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AE_PSAMI1.642e-3164.81Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A3_LYTPI2.144e-3164.81Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A_TIGCA2.800e-3164.49Histone H2A OS=Tigriopus californicus GN=His2A PE=... [more]
H2A_RHYAM2.800e-3164.49Histone H2A OS=Rhynchosciara americana GN=His2A PE... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756133 ID=EY756133; Name=EY756133; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGCCACGAAACCTGTCACTTTGTTGAAGTAAATCTTTCTGC
ATTTTGAGGTTGGGTCATGGATACACCAGTCAAAGTGAAGAAGGGAGCCG
GCGGAAGGAAGGGAGGAGGACCGAAAAAGCAATCCGTTTCCAGGTCTGTG
AAAGCGGGGCTCCAATTCCCAGTAGGTAGAATCGGGCGTTTCTTGAAGAA
GGGAAGATATTCGCAGCGTGTGGGTAGCGGTGCTCCAGTTTACATGGCCG
CTGTGCTCGAGTACCTAGCTGCTGAAGTGTTGGAGTTGGCTGGGAACGCG
GCACGTGACAACAAGAAGAAGAAGATCATCCCAAGGCACGTGCAATTAGC
GGTGAGGAATGATGAGGAGTTGGGGAAATTACTCACAGGTGTGACGATTG
CAAGCGGCGGCGTTTTGCCTAATATCAACCCAGTGCTGTTGCCAAAGAAG
ACTAAGGAAAGTGTTGCGAAGGAGCCCAAATCTCCATCCAAGGCTACCAA
GTCCCCAAAGAAAGCCTAGATTAGTTGTATCTTGAGTGCTACCGCATGTA
ATGTTCAGTCTAGGTTTTCCCATTTTGCTCTTTTTTCTTTTGATATATGC
TGTGTGTGTGTTGTTAGCATAGCCTCGGCCTGTTAAATGAATCGAAACAA
GTTGTTTTTTGTAACTATAAACCCCTTTCATATGGGGATTTAATTATAGT
TTATAAATCTTCTACAAAAAAAAAAAAAAAAAAAAGGGCGGCCGCCCTTT
TTTTTTTTTTTTTTTTTTTTGGATAATCTCATCCAGTACACATAGTTAAA
GATTAGCAAATGCAATCTCTGGTTACATAAAAAAAAAACTCATAACCATT
TTTCTTTTTGGCCTTTTTACCGATAC
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