EY756133

Overview
NameEY756133
Unique NameEY756133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756133_ssr601 microsatellite EY756133_ssr601:601..610. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756133_ssr313 microsatellite EY756133_ssr313:313..324. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1382 contig Csv1_Contig1382:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.658e-31
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            +S SRS KAGLQFPVGRI RFLK G+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK   S
Sbjct:   15 KSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSS 125
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.777e-31
Identity = 68/108 (62.96%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            SRS +AGLQFPVGR+ RFL+KG Y++RVG+GAP                  GNAARDNKK +I PRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT ++
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTAKA 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 68/107 (63.55%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKK 450
            ++VSRS KAGLQFPVGRI R+LK G+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL +LL  VTIA+GGVLPNI  VLLPKK
Sbjct:   17 KAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 68/107 (63.55%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKK 450
            ++VSRS KAGLQFPVGRI R+LK G+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL +LL  VTIA+GGVLPNI  VLLPKK
Sbjct:   17 KAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            ++ SRS KAGLQFPVGRI RFLK G+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL KLL G TIASGGV+PNI+  LLPKK   S
Sbjct:   15 KATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSS 125
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            ++ SRS KAGLQFPVGRI RFLK G+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL KLL G TIASGGV+PNI+  LLPKK   S
Sbjct:   15 KATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSS 125
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            +S SRS KAGLQFPVGRI RFLK G+Y+ RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK   S
Sbjct:   15 KSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGAS 125
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTK 456
            SRS +AGLQFPVGR+ R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:  139 SRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTK 456
            SRS +AGLQFPVGR+ R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            ++ SRS KAGLQFPVGRI RFLK G+Y++RVG+GAP                  GNAARDNKK +I+PRH+QLAVRNDEEL KLL G TIASGGV+PNI+  LLPKK   S
Sbjct:   15 KATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSS 125
The following BLAST results are available for this feature:
BLAST of EY756133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A3_ARATH3.658e-3162.16Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A_ASTRU4.777e-3162.96Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2AXA_ORYSJ6.239e-3163.55Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI6.239e-3163.55Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A7_ORYSJ6.239e-3162.16Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI6.239e-3162.16Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A2_ARATH6.239e-3162.16Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A2B_MOUSE6.239e-3165.09Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN6.239e-3165.09Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A1_ORYSJ6.239e-3162.16Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756133 ID=EY756133; Name=EY756133; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGCCACGAAACCTGTCACTTTGTTGAAGTAAATCTTTCTGC
ATTTTGAGGTTGGGTCATGGATACACCAGTCAAAGTGAAGAAGGGAGCCG
GCGGAAGGAAGGGAGGAGGACCGAAAAAGCAATCCGTTTCCAGGTCTGTG
AAAGCGGGGCTCCAATTCCCAGTAGGTAGAATCGGGCGTTTCTTGAAGAA
GGGAAGATATTCGCAGCGTGTGGGTAGCGGTGCTCCAGTTTACATGGCCG
CTGTGCTCGAGTACCTAGCTGCTGAAGTGTTGGAGTTGGCTGGGAACGCG
GCACGTGACAACAAGAAGAAGAAGATCATCCCAAGGCACGTGCAATTAGC
GGTGAGGAATGATGAGGAGTTGGGGAAATTACTCACAGGTGTGACGATTG
CAAGCGGCGGCGTTTTGCCTAATATCAACCCAGTGCTGTTGCCAAAGAAG
ACTAAGGAAAGTGTTGCGAAGGAGCCCAAATCTCCATCCAAGGCTACCAA
GTCCCCAAAGAAAGCCTAGATTAGTTGTATCTTGAGTGCTACCGCATGTA
ATGTTCAGTCTAGGTTTTCCCATTTTGCTCTTTTTTCTTTTGATATATGC
TGTGTGTGTGTTGTTAGCATAGCCTCGGCCTGTTAAATGAATCGAAACAA
GTTGTTTTTTGTAACTATAAACCCCTTTCATATGGGGATTTAATTATAGT
TTATAAATCTTCTACAAAAAAAAAAAAAAAAAAAAGGGCGGCCGCCCTTT
TTTTTTTTTTTTTTTTTTTTGGATAATCTCATCCAGTACACATAGTTAAA
GATTAGCAAATGCAATCTCTGGTTACATAAAAAAAAAACTCATAACCATT
TTTCTTTTTGGCCTTTTTACCGATAC
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