EY756116

Overview
NameEY756116
Unique NameEY756116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13306 contig Csv1_Contig13306:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   26 DSPVLVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 304
            D  V V LACG++S      A++PL LVR R Q + +   A   T  +   F+ I RTEG  GLYRG+ P + KV+P V I ++ YE LK+ L
Sbjct:  374 DPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASMEGAPEVT--MSSLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITL 464          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   26 DSPVLVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 304
            D  V V LACG++S      A++PL LVR R Q + +   A   T  +   F+ I RTEG  GLYRG+ P + KV+P V I ++ YE LK+ L
Sbjct:  374 DPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVT--MSSLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITL 464          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   26 DSPVLVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 304
            D  V V LACG++S      A++PL LVR R Q + +   A   T  +   F+ I RTEG  GLYRG+ P + KV+P V I ++ YE LK+ L
Sbjct:  374 DPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVT--MSSLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITL 464          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   35 VLVSLACGSLSGIASSTATFPLDLVRRRKQ----LEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 304
            VLV L CG+LS      A++PL LVR R Q    LEGA          + G F+ I   EG  GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  383 VLVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGAP------QLNMVGLFRRIISKEGLPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 470          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 2
Query:   35 VLVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 304
            V+V L+CG+LS      A++PL LVR R Q +     A   +  + G FQ I   EG  GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  383 VMVLLSCGALSSTCGQLASYPLALVRTRMQAQATVEGAPQLS--MVGLFQRIVSKEGVSGLYRGITPNFMKVLPAVGISYVVYENMKQTL 470          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: TPC1_ASPNC (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 2
Query:   50 ACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTT-----GLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLLADI 313
            A G ++ ++S T  FPLDL+R+R Q++G   +  ++       G+F T + I RT+G RGLYRG+    +K  P   +   TYET   LL D+
Sbjct:  221 AAGVIASVSSKTVMFPLDLIRKRLQVQGPTRQLYIHRNIPEYQGVFNTMKLILRTQGIRGLYRGLTVSLFKAAPASAVTMWTYETSLRLLQDM 313          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: S238A_DANRE (Solute carrier family 25 member 38-A OS=Danio rerio GN=slc25a38a PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 2
Query:   32 PVLVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLK 295
            P + +  CGSLSG  S+    PLDLV+ R Q   +G +      G+   F  + RTE   GL+RG+ P + + +PGVGI F TY TLK
Sbjct:    8 PAVKAFMCGSLSGTCSTLLFQPLDLVKTRLQTLHSGVQPGTGRVGMVTVFVNVLRTEKLLGLWRGVSPSFVRCIPGVGIYFSTYFTLK 95          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: BT1_MAIZE (Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 2
Query:    5 ASARRHN-DSPVLVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLLAD 310
            A+ RR   D   + +L  GS +G  +S+ATFPL++ R++ Q+   GGR +VY   L   +  I + EG  GLYRG+ P   K++P  GI FM YE  K +L D
Sbjct:  315 ATGRRPGADVGPVATLLIGSAAGAIASSATFPLEVARKQMQVGAVGGR-QVYQNVLHAIY-CILKKEGAGGLYRGLGPSCIKLMPAAGIAFMCYEACKKILVD 415          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   35 VLVSLACGSLSGIASSTATFPLDLVRRRKQ----LEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 304
            V+V L CG+LS      A++PL LVR R Q    LEG+          + G F+ I   EG  GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  385 VMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSP------QLNMVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 472          
BLAST of EY756116 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 2
Query:   35 VLVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 304
            V+V L CG+LS      A++PL LVR R Q +    ++      + G F+ I   EG  GLYRGI P + KV+P VGI ++ YE +K  L
Sbjct:  385 VMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMIEKSP--QLNMVGLFRRILSKEGLPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 472          
The following BLAST results are available for this feature:
BLAST of EY756116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SCMC2_BOVIN7.558e-1343.01Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_RAT9.871e-1343.01Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE9.871e-1343.01Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT2.199e-1244.68Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE2.199e-1243.33Calcium-binding mitochondrial carrier protein SCaM... [more]
TPC1_ASPNC2.872e-1237.63Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S238A_DANRE3.751e-1242.05Solute carrier family 25 member 38-A OS=Danio reri... [more]
BT1_MAIZE4.899e-1240.78Protein brittle-1, chloroplastic/amyloplastic OS=Z... [more]
SCMC1_HUMAN8.357e-1242.55Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN8.357e-1241.11Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756116 ID=EY756116; Name=EY756116; organism=Citrus sinensis; type=EST; length=560bp
CCACGCGTCCGCACGAAGGCACAATGATTCCCCCGTCCTGGTCAGTCTGG
CATGTGGCAGTCTTTCAGGCATTGCATCATCAACAGCAACATTTCCTCTG
GATTTGGTGAGGCGAAGAAAGCAACTCGAAGGGGCGGGTGGCCGGGCCAG
GGTTTACACAACGGGTCTTTTTGGTACATTTCAGTACATATTCCGGACTG
AAGGCTTCCGTGGTCTGTACAGAGGAATTCTTCCTGAATATTACAAAGTG
GTTCCTGGAGTCGGTATTTGTTTCATGACATATGAAACACTGAAGATGCT
TTTAGCAGATATTTCTTCCTGACTATAGTCGCCATCAGCTCTGGACTTCA
CCGTCTACAATGGTAAGGATGAGGTGGTTAAGAGTTGTGATGTAATAGCA
TATAACCATTCATTTTGATCTGCTCTCTCATGGTGATTAATATGTGATTC
TTACGTGAGAATTATATTTTTTTCGTGTATAAATTAGTGAAACGTAAATC
ACAGTTTCAAGTGTACTTATCATAGTTATTCACATTTCTCAATAACATCA
GTTTGACCAG
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