EY756095

Overview
NameEY756095
Unique NameEY756095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756095_ssr144 microsatellite EY756095_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1193 contig Csv1_Contig1193:1223..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.784e-12
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  401 YAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 434          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.784e-12
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  400 YAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.784e-12
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  400 YAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.329e-12
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1
Query:   16 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            +KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  405 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 437          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.329e-12
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+K AFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  315 YAKLAFVHWYVGEGMEEGEFSEAREDLAALEKDY 348          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.042e-12
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y KRAFVHWYVGE MEEGEFSEAREDLAALEKDY
Sbjct:  397 YRKRAFVHWYVGEAMEEGEFSEAREDLAALEKDY 430          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYVGEGMEE EFSEAREDLAALEKDY
Sbjct:  399 YAKRAFVHWYVGEGMEEVEFSEAREDLAALEKDY 432          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            YSKRAFVHW+VGEGMEEGEF EAR+DLAALEKDY
Sbjct:  402 YSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDY 435          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYV EGMEEGEF+EAREDLAALEKDY
Sbjct:  274 YAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 307          
BLAST of EY756095 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1
Query:   13 YSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 114
            Y+KRAFVHWYV EGMEEGEF+EAREDLAALEKDY
Sbjct:  396 YAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 429          
The following BLAST results are available for this feature:
BLAST of EY756095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TBA_ASHGO1.784e-1291.18Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA3_YEAST1.784e-1291.18Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_YEAST1.784e-1291.18Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA_GLOLA2.329e-1296.97Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA2_ANEPH2.329e-1294.12Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBAB_SCHCO3.042e-1294.12Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBAE_PHYPO3.973e-1294.12Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA8_CAEEL3.973e-1291.18Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA4_CHICK3.973e-1291.18Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CHICK3.973e-1291.18Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-E07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756095 ID=EY756095; Name=EY756095; organism=Citrus sinensis; type=EST; length=362bp
CCACGCGTCCGGTACTCGAAGAGGGCGTTTGTGCATTGGTATGTGGGTGA
AGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAGGATTTGGCTGCAC
TTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGCTGACGGAGAAGAA
GAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATTTGTTCTTCTGCCA
ATGGACTCATTGGTCTGCCCTCGCTATAATGGATGATACCAGACTCATAT
GTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTGTTATATATTAGGC
CCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCTTTATTTATTATAT
ATTTGAGGCACA
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