EY756069

Overview
NameEY756069
Unique NameEY756069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.237e-38
Identity = 83/103 (80.58%), Postives = 87/103 (84.47%), Query Frame = 2
Query:   20 QLVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 322
            Q+VLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  163 QVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 2
Query:   20 QLVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 322
            +++LMGAVEGYRIA GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  168 KVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.780e-36
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 2
Query:   20 QLVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 322
            Q++LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  166 QVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 2
Query:    5 ASGACQLVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 322
            A+ A Q+VLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  145 ATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.595e-29
Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = 2
Query:   14 ACQLVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 319
            A Q++LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   16 ATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.720e-26
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 2
Query:   20 QLVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 289
            ++VL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  178 EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.788e-20
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 2
Query:   71 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 289
            LG   DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 2
Query:   86 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 289
            +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.851e-17
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   95 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 289
            YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of EY756069 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.851e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 2
Query:   95 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 289
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of EY756069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB23_SOLLC4.237e-3880.58Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_MALDO5.534e-3880.20Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_HORVU1.780e-3677.67Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE3.357e-3570.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR3.595e-2964.15Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH3.720e-2665.56Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC1.788e-2063.51Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.674e-1859.42Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU1.851e-1766.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.851e-1766.67Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-C03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756069 ID=EY756069; Name=EY756069; organism=Citrus sinensis; type=EST; length=663bp
CCACGCGTCCGGGGCTTGCCAGCTGGTCTTGATGGGAGCCGTTGAGGGTT
ACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCA
GGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGC
TGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCA
TGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAG
AACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTA
CGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTA
GCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTC
AACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTACCAGTTTGAG
GGGATTGTATTTTCATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTC
CTCCTCCTTACAGGTTGTGCCAGAATCTAGTTACAAGTTTACGTCGAAAA
AAAAAAAAGGGAGGAGTGGTGAAGAAAAGATAGCAATGGAGAACAAAACG
ATCTCCTCAAAAAAGGGCGGGCCGCTCTAAAGAACCAAATTTAAGGTACG
GGGGCCTGGGGAG
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