EY756066

Overview
NameEY756066
Unique NameEY756066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:113..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.496e-27
Identity = 74/176 (42.05%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  320 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFL-QAYVTGESPXENFA 841
            P +L G  PGD+G+DP GL+  P++F +++  E+ H RWAML   G ++PEA      N      W    A L DG    Y G  +P  NL   +  E + +  AE  R T   D E K +PGG+FDPLG +KDP +F  LK+KE +NGRLAM A +GF + Q+   G  P EN A
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL--GNWVKAQEW----AALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLA 222          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.185e-24
Identity = 80/195 (41.03%), Postives = 105/195 (53.85%), Query Frame = 2
Query:  326 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGS-FDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXEN 835
            YL G +PGD+G+DP GLS           K+ AY E+I+ R+AMLGAAG I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       D  +PGG  F+PLG  KD      LK+KE +NGRLAM A+LG+F+QA VTG  P +N
Sbjct:   65 YLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQN 253          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.310e-23
Identity = 78/213 (36.62%), Postives = 102/213 (47.89%), Query Frame = 2
Query:  269 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGS-FDPLGLAK-DPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXEN-FANIS 850
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KE +NGRLAM A++G + Q   TG  P +N FA+++
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.711e-23
Identity = 77/213 (36.15%), Postives = 102/213 (47.89%), Query Frame = 2
Query:  269 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGS-FDPLGLAK-DPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXEN-FANIS 850
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KE +NGRLAM A++G + Q   TG  P +N FA+++
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.919e-23
Identity = 77/195 (39.49%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  326 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGSF-DPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXEN 835
            YL G +PGDYG+DP GLS           ++ AY E+I+ R+AMLGA G I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       +  +PGG F +PLG  KD      LK+KE +NGRLAM A+LG+F+Q  VTG  P +N
Sbjct:   67 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 255          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.978e-23
Identity = 76/221 (34.39%), Postives = 104/221 (47.06%), Query Frame = 2
Query:  320 PEYLTGEVPGDYGYDPFGLSK----------------------------------KPDDFSKY---------QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFANIS 850
            PE+L G + GD G+DPFGL K                                  KP  F  Y         +  ELIH RWAMLG  G I  EA             W   G + L++G++  Y G+ +P +L   +  E+++VG  E+ R  + LD E +++PGG FDPLGLA DP++   LK+ E ++ RLAM A L F LQA  TG+ P    A  +
Sbjct:   66 PEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLATFN 275          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.471e-22
Identity = 77/241 (31.95%), Postives = 111/241 (46.06%), Query Frame = 2
Query:  254 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGSF-DPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFA 841
            AK    DR ++ P      ++ PEYL G + GDYG+DPFGL K  +                                              +++  ELIH RWAML   G I  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP + A L++ E ++ RLAM   LGF +QA  TG+ P  N+A
Sbjct:   45 AKTVISDRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWA 269          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.189e-22
Identity = 70/219 (31.96%), Postives = 104/219 (47.49%), Query Frame = 2
Query:  320 PEYLTGEVPGDYGYDPFGLSKKPD-------------------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGSF-DPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFA 841
            P++L G + GDYG+DPFGL K  +                                              +++  ELIH RWAML   G +  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP++ A L++ E ++ RLAM A LGF +QA  TG+ P  N+A
Sbjct:   65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 272          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 7.189e-22
Identity = 71/223 (31.84%), Postives = 105/223 (47.09%), Query Frame = 2
Query:  320 PEYLTGEVPGDYGYDPFGLSKK------------------------------PDDFS---------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGSFDPLGLAKDPDQFAL-LKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFANIS 850
            PE+L G +PGD G+DP GLSK                               PD+ S               +++  ELIH RWAML   G ++ EA             W + G + LDG   +Y G ++P ++   +  E++LVGGAE+YR  +  + E + +PGG FDPL LA + ++ A  LK  E ++ RLAM +  G+ +QA  TGE    + A  +
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKFA 271          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.189e-22
Identity = 69/185 (37.30%), Postives = 96/185 (51.89%), Query Frame = 2
Query:  320 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXEN 835
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A  P Q A  K KE  NGRLAM A LGF +Q  VTG+ P EN
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFEN 233          
The following BLAST results are available for this feature:
BLAST of EY756066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB121_HORVU1.496e-2742.05Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB13_SOLLC1.185e-2441.03Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB12_SOLLC1.310e-2336.62Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.711e-2336.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_PEA2.919e-2339.49Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4C_ARATH4.978e-2334.39Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4B_ARATH2.471e-2231.95Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH7.189e-2231.96Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB29_CHLRE7.189e-2231.84Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB24_ARATH7.189e-2237.30Chlorophyll a-b binding protein 4, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756066 ID=EY756066; Name=EY756066; organism=Citrus sinensis; type=EST; length=899bp
TTCGTCGACCACGCGTCCGAGCAGCAACATTCCGAAGATGGCTTCATTGG
CAGCATCGTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCTTGGC
AACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATC
AAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCG
CCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAG
CTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCT
CTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAG
ACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGC
AAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGC
TGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTG
GTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAAC
ACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGT
CATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCA
ACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGGTCATTTGACCCA
CTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGA
GATNCAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGGTTCTTTCTCC
AAGCTTATGTCACAGGTGAAAGTCCCGNTGAGAACTTTGCTAACATCTCA
GTGACCTTTTGCCACCAACCTGGTTACGTGATCTTCGGAAACGCAAAAA
back to top