EY756061

Overview
NameEY756061
Unique NameEY756061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 164.466 bits (415), Expect = 7.729e-40
Identity = 88/170 (51.76%), Postives = 110/170 (64.71%), Query Frame = 1
Query:  214 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAK  E+                   +  E+ +DQK VD  L   I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAK--EKLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.836e-39
Identity = 87/170 (51.18%), Postives = 109/170 (64.12%), Query Frame = 1
Query:  214 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAK  E+                   +  E+ +DQK VD  L   I+  P LK YL A FSL+ G KPH L F
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAK--EKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.508e-35
Identity = 83/171 (48.54%), Postives = 110/171 (64.33%), Query Frame = 1
Query:  214 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            +YPA     P   ++  +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+ +R                   LP E+  DQK+VD  L  AI+A+P++K YL A F+L  G +PH + F
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.845e-31
Identity = 75/158 (47.47%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  253 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            K+  +   LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V    +D YFA E +                    +   +  DQKSVD+ +   ++    L  YL  +F L+ G  PH+L F
Sbjct:   79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.119e-30
Identity = 92/245 (37.55%), Postives = 127/245 (51.84%), Query Frame = 1
Query:   25 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKR-------KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLK---AYLGARFSLRAGMKPHELVF 723
            M  K+  P +SRN +L  G+ +FS S++  K+G    K                         F      K P + +          K   LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q++VI TS KV++SGV + +  +D+YF +   +                   + +++K D K+VD P+  AI+  P+ K    YLG RFSL     PH++ F
Sbjct:    1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPK-------------------------FTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKR---KSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217          
The following BLAST results are available for this feature:
BLAST of EY756061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6B_YEAST7.729e-4051.7660S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST3.836e-3951.1860S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_SCHPO1.508e-3548.5460S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_DICDI3.845e-3147.4760S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_CAEEL1.119e-3037.5560S ribosomal protein L6 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-B07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756061 ID=EY756061; Name=EY756061; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGGCGGGTAGCATCAATGGCGCCGAAGCAAGGGAAGCCAAG
AGTGAGCAGGAATCCGGAGCTGATCCGAGGAATTGGAAAGTTCTCTCGTT
CAAAGATGTACCATAAGAGGGGTCTGTGGGCAATTAAAGCCAAAAACGGT
GGCGTCTTTCCTCGTCACGACCCTAAGCCCAAAGCCGCTGCTCCCGCCGA
GAAGCCCCCCAAGTTTTACCCCGCCGATGACGTCAAGAAACCACTCGTCA
ACAAGCGCAAGCCTAAACCCACCAAGCTTAGAGCAAGCATCACCCCAGGG
ACAGTGCTGATTATACTAGCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTT
CCTGAAGCAGCTTCCATCTGGGTTGCTTCTAGTTTCTGGGCCATTTAAGA
TCAATGGTGTTCCTTTACGACGTGTGAACCAGTCTTACGTGATTGGAACT
TCTACCAAAGTTGATATCTCCGGAGTGAATGTGGATAAGTTTGATGATAA
GTATTTTGCCAAGGAAGTCGAGAGGAAGAAGAAGAAAGGAGAGAATGAGT
TCTTTGAGTCAGAGAAAGAGGGAGAGAAGTCGCTTCCTCAGGAGAAGAAG
GATGATCAGAAGTCCGTTGATACACCATTGATNCAGGCCATTGAGGCTGT
TCCAGACTTGAAGGCTTACCTTGGTGCTAGGTTTTCCCTCAGGGCCGGCA
TGAAACCTCATGAACTTGTCTTCTGAAAACATGTGAAACAATTTAGGATT
GCTTTGCTTTTCCTACTTGGTATGGTTTGCCTGAAATTTATTTACAAGTG
GAATCTTTGGTTCATGGATCAAACATCTAATTTTGGTATGAGTAAGAAAA
TGAATGGTTTCTTCAGGGACAATTGATACTGAAAAAAAAAAAAAAAAAAA
AAAA
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