EY756056

Overview
NameEY756056
Unique NameEY756056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.080e-28
Identity = 79/190 (41.58%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            P YL G  PGD+G+D   L   PE  +RY+E ELIH RWAML   G   PE L       G   W +A       GG   YLGNP  V    +     ++ + +  +E  R       +     YPG +FDPLG + DP  F E KVKEIKNGRLA  +  GF V Q+   G GP++NL  HLA+P  NN
Sbjct:   54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.253e-28
Identity = 80/196 (40.82%), Postives = 101/196 (51.53%), Query Frame = 3
Query:   15 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            E  P YL G  PGD+G+D   +   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   Y GNP  +   ++  I   + + +  +E  R          DP     PGGAFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:   64 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGG-LDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 254          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 81/197 (41.12%), Postives = 104/197 (52.79%), Query Frame = 3
Query:   12 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            G P P YL G  PGD+G+D   L   PE   + +E E+IHCRWA+    G + PE L       G G W +A       GG  ++ GNP  V   ++  I   + + +  VE             DP    Y GG+FDPLG   DP++F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HL DP +NN
Sbjct:   62 GSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGG-LSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 80/194 (41.24%), Postives = 104/194 (53.61%), Query Frame = 3
Query:   18 PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ---AQEW-----AAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            PR P   G  PGD+G+D   L   PE  +RY+E ELIH R  +L   G++ PE L   + ++   A  W     A    G   YLGNP  +    +   L ++ + +  VE  R +   P  +     YPG AFDPLG + DP  F E KVKEIKNGRLA+ A +GF V Q+   G GP+ENL  HLA+P  NN
Sbjct:   73 PRLP--TGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR-VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAIVTGKGPIENLTDHLANPAENN 262          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.207e-26
Identity = 82/191 (42.93%), Postives = 99/191 (51.83%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            P YL+G  PGD+G+D   L   PE   R +  E+IH RWAML   G + PE L     V+ +E  W          G   YLGNP  V   ++  +L  + L +  VE  R    D        YPGG  FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HL DP  NN
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.882e-26
Identity = 82/207 (39.61%), Postives = 106/207 (51.21%), Query Frame = 3
Query:   30 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR----------------SMEK------DPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 560
            YLDG  PGDFGFDPL L + PE    + E       E+I+ R+AML   G + PE LG    + Q    A    G     G    W    T+ V+E   + F EH+R                 +EK      DP    YPGG  F+PLGF KD +  +E K+KEIKNGRLA+LA +G+ + Q+   G GP +NL  HLADP +NN+
Sbjct:   65 YLDGRLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNLLDHLADPVNNNV 266          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.095e-25
Identity = 80/204 (39.22%), Postives = 105/204 (51.47%), Query Frame = 3
Query:   30 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALG-LGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 560
            YLDGS PGD+GFDPL L + PE    + E       E+I+ R+AML   G + PE LG +G   Q    A    G     G    W    T+ V+E   + F EH+R        SM K                 YPGG F +PLGF KD +  +E K+KE+KNGRLA+LA +G+ + Q    G GP +NL  H+ADP +NN+
Sbjct:   67 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHVADPVNNNV 268          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 78/193 (40.41%), Postives = 97/193 (50.26%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            P YL+G  PGD+G+D   L   PE   + +  E+IH RWAML   G + PE L    WV+      V           G   YLGNP  V   ++  +L  + + +  VE  R             YPGG  FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HL +P  NN
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLE--KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 78/193 (40.41%), Postives = 97/193 (50.26%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            P YL G   G        L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+   E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   65 PSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 244          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23
Identity = 83/231 (35.93%), Postives = 112/231 (48.48%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN-------------------------------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 563
            P   RP +LDGS PGD GFDPL L +        V EN                                     L R++E ELIH RWAMLA  G LV EA    +WV+A     V    A+Y G  +P+ ++  ++ IE + +   E  R+ E +PEK+ YPGG FDPL   S+D ++    K  EIK+ RLA+++F G+ V Q+   G G L +LA   AD  +N  G
Sbjct:   55 PNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA---GKVELDGASYAGLSLPF-SITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGV-QALSTGEGALGSLA-KFADGLNNGKG 279          
The following BLAST results are available for this feature:
BLAST of EY756056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB2_CHLRE3.080e-2841.58Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PINTH5.253e-2840.82Chlorophyll a-b binding protein type I, chloroplas... [more]
CB48_MAIZE2.607e-2741.12Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_DUNSA3.405e-2741.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU2.207e-2642.93Chlorophyll a-b binding protein of LHCII type III,... [more]
CB13_SOLLC2.882e-2639.61Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.095e-2539.22Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_SOLLC1.582e-2440.41Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_SOYBN4.602e-2440.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_CHLRE8.679e-2335.93Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-B01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756056 ID=EY756056; Name=EY756056; organism=Citrus sinensis; type=EST; length=770bp
CCACGCGTCCGGGCGAGCCCCGGCCGCCTTATCTTGATGGTTCAGCCCCA
GGGGACTTTGGATTTGACCCACTTCGGCTTGGCGAAGTTCCTGAGAACCT
TGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGGGCTATGCTTG
CTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGGCAACTGGGTG
CAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCACATACTTAGG
CAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTGATTGAATTCC
TTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAAAGACCCCGAG
AAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCTTCTCCAAGGA
CCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAAAATGGGCGTT
TGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATCAGCATATCCG
GGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCA
CAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTGCCTTGAAGAA
CTGCATTGTTAAATTATCCAGTCCACTGTAAAATTCCCTGGTAAAAGAGC
CTTTTATGAAACAGAATTCGTATCTTTCTGACTGTAAGATTAGAAAGTAA
TTTGTCCTCCATGACGNTCGTGCTAGAATCTAATACTACTGTGATTTGCC
GNAAAAAAAAAAAAAAAAAA
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