EY756056

Overview
NameEY756056
Unique NameEY756056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.265e-20
Identity = 71/189 (37.57%), Postives = 89/189 (47.09%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 575
            P    P +L+G   GD GFDP  L   P+  ER + +E+ H R AMLAV G LVP+ LG G W +A + A +                L  + +       F   +   E       YPG  FDPL  + D       K  EIKNGRLAL A +GF VQ+    G+ PL NLA HL  P   NI D I+
Sbjct:    7 PNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLAEHLQQPLQRNIADSIM 172          

HSP 2 Score: 88.1965 bits (217), Expect = 5.449e-17
Identity = 68/192 (35.42%), Postives = 89/192 (46.35%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAF---VEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 560
            P    P  L G  P D GFDPL L   P+   R + +E+ H R AML   G +VPE LG G W +A +  +V G                  L + F+++A     E+ R     + +K    + YPG  FDPL  + D       +  E+KNGRLAL A  G   Q  A  G  PL NL+ HLA+P   NI
Sbjct:  192 PNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TGESPLANLSAHLANPIGANI 355          

HSP 3 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 63/173 (36.42%), Postives = 80/173 (46.24%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 524
            P YL G A GD GFDP  L   P   ER + +E+ HCR +MLA+ G LVPE LG G W Q   W  V   +                 V+    +A +E+ R        +++   + YPG  FDPL  +      E  K  EIKNGRLA+    G  V QS   G  P+ NL
Sbjct:  381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWFQI--WDKVDFNR---------------FAVVALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEIKNGRLAMNGMFGLEV-QSHVTGKSPINNL 528          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 73/190 (38.42%), Postives = 95/190 (50.00%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-----GLGN--WVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSME---KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            P YL G  PGD+G+D   L   PE   + +E E+IH R AM A  G + PE L     G G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R       +     YP G+FD LG ++D + F E KVKE+KNGRLA+ +  GF V Q+       LENLA HL    +NN
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFV-QAIVSRKDRLENLADHLGWTVNNN 256          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.532e-19
Identity = 73/184 (39.67%), Postives = 95/184 (51.63%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK----------------------YPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 476
            P +LDGS PGDFGFDPL LG+ P  L+ Y+E+ELIH RWAMLAV GI V +A     W +A    A PG  A     P  +GTL   L  + L + +VE +R ++  DP+ +                       YPGG  FDPL          ++ D  K E  K+ EIK+ RLA+LA + F
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEA---GADPGAVA-----PFSFGTL---LGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 71/184 (38.59%), Postives = 94/184 (51.09%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK----------------------YPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 476
            P +LDGS PGD+GFDPL LG+ P  L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +GTL   L  + + + +VE +R ++  DP+ +                       YPGG  FDPL          +  D +K E  KV EIK+ RLA+LA + F
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGTL---LGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.297e-18
Identity = 70/189 (37.04%), Postives = 89/189 (47.09%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 560
            PG   P +L G  P D GFDPL +   P    R + SE+ H R +MLA+ G +VPE LG G W +              +GN V    L  IL+      A  E+ R     + +K    + YPG  FDPL  + D      Y  +EIKNGRLA+   +G   Q  A  G  PL NLA H A+P   NI
Sbjct:  164 PGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGKGAWFE--------------VGNSVDGIKLGFILM---AIAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTD------YTKREIKNGRLAMTGLLGLTFQYLA-TGESPLANLAAHFANPVGANI 326          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18
Identity = 71/184 (38.59%), Postives = 94/184 (51.09%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSME----------------KDPE-------KKKYPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 476
            P +LDGS PGDFGFDPL LG+ P  L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L + +VE +R ++                K  E       ++ YPGG  FDPL          +  D +K E  K+ EIK+ RLA+LA + F
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  360 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 104          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  360 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  360 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.172e-17
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  360 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of EY756056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
LH18_EUGGR5.265e-2037.57Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_MALDO6.877e-2038.42Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB4_SPIOL1.532e-1939.67Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC9.930e-1938.59Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
LH15_EUGGR1.297e-1837.04Light-harvesting complex I LH35 proteins (Fragment... [more]
CB4B_SOLLC6.436e-1838.59Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2D_SOLLC2.446e-1765.15Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.446e-1765.15Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.446e-1765.15Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC4.172e-1763.64Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-B01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756056 ID=EY756056; Name=EY756056; organism=Citrus sinensis; type=EST; length=770bp
CCACGCGTCCGGGCGAGCCCCGGCCGCCTTATCTTGATGGTTCAGCCCCA
GGGGACTTTGGATTTGACCCACTTCGGCTTGGCGAAGTTCCTGAGAACCT
TGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGGGCTATGCTTG
CTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGGCAACTGGGTG
CAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCACATACTTAGG
CAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTGATTGAATTCC
TTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAAAGACCCCGAG
AAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCTTCTCCAAGGA
CCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAAAATGGGCGTT
TGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATCAGCATATCCG
GGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCA
CAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTGCCTTGAAGAA
CTGCATTGTTAAATTATCCAGTCCACTGTAAAATTCCCTGGTAAAAGAGC
CTTTTATGAAACAGAATTCGTATCTTTCTGACTGTAAGATTAGAAAGTAA
TTTGTCCTCCATGACGNTCGTGCTAGAATCTAATACTACTGTGATTTGCC
GNAAAAAAAAAAAAAAAAAA
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