EY756039

Overview
NameEY756039
Unique NameEY756039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.904e-16
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKE 554
            +IGP   G I  G  KIG   G I        + PG VG VS+SG ++   Y  + + TD   G    + IGGD  PGS   D +  F   PQ + +V++GE+GG  E      +K   V KPVV++++G  A   K   + GHAGA   G   +A  K  AL+DAG     S      A+ E
Sbjct:  119 LIGPNCPGVITPGECKIGIMPGHI--------HLPGKVGIVSRSGTLT---YEAVKQTTDAGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAFIK-ANVTKPVVSYIAGVTAPPGK---RMGHAGAIISGGKGTADEKFAALQDAGVKTVRSLADIGKALAE 286          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTS 524
            +IGP   G I  G  KIG   G I  I        G +G VS+SG ++ E          G    + IGGD   G++  D I  F    + K ++++GE+GG  E    + +KQ K+ KP+V++++G  A    ++ + GHAGA   G   SA+ K + L+ AG ++  S
Sbjct:  119 LIGPNCPGVITPGECKIGIMPGHIHKI--------GDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGDPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKIKKPIVSFIAGITA---PADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRS 277          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 64/182 (35.16%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIK 551
            +IGP   G I  G  KIG   G I        ++PG VG VS+SG ++   Y  + + TD   G    + IGGD  PGS   D +  F   PQ + +V++GE+GG  E      +K+  V KPVV +++G  A   K   + GHAGA   G   +A  K  AL  AG     S      A+K
Sbjct:  119 MIGPNCPGVITPGECKIGIQPGHI--------HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALK 285          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 64/182 (35.16%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIK 551
            +IGP   G I  G  KIG   G I        ++PG VG VS+SG ++   Y  + + TD   G    + IGGD  PGS   D +  F   PQ + +V++GE+GG  E      +K+  V KPVV +++G  A   K   + GHAGA   G   +A  K  AL  AG     S      A+K
Sbjct:  119 MIGPNCPGVITPGECKIGIQPGHI--------HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALK 285          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 64/182 (35.16%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTD---GIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIK 551
            +IGP   G I  G  KIG   G I        ++PG VG VS+SG ++   Y  + + TD   G    + IGGD  PGS   D +  F   PQ + +V++GE+GG  E      +K+  V KPVV +++G  A   K   + GHAGA   G   +A  K  AL  AG     S      A+K
Sbjct:  119 MIGPNCPGVITPGECKIGIQPGHI--------HKPGKVGIVSRSGTLT---YEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAPKGK---RMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALK 285          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 64/187 (34.22%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 566
            +IGP   G I  G  KIG   G I        ++ G +G VS+SG ++ E  +   +V  G    + IGGD F G+   D +  F N    + ++++GE+GG  E +  E LKQ   G  +KPVV++++G  A   +   + GHAGA   G    A+ K  AL+ AG VV  S     + I + FEK
Sbjct:  167 LIGPNCPGVINPGECKIGIMPGHI--------HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGR---RMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 58/170 (34.12%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTS 524
            +IGP   G I+ G  KIG   G I        ++PG +G VS+SG ++ E       V  G    I IGGD F G+   D +  F   PQ + ++++GE+GG  E    + L     +KPVV++++G  A   +   + GHAGA   G    A +K +AL+ AG  V  S
Sbjct:  139 LIGPNCPGIIKPGECKIGIMPGHI--------HKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSFIAGLSAPPGR---RMGHAGAIISGGKGDANSKIEALKAAGVTVTFS 297          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.242e-16
Identity = 56/187 (29.95%), Postives = 89/187 (47.59%), Query Frame = 3
Query:    6 RPVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 566
            R +V+GP   G I  G   +G   G I        Y PG VG +S+SG +  E    +  +  GI   + IGGD   GS+  DH+  F   P+ + ++++GE+GG  E      +K+   +KPV+ +V+G  A   +   + GHAGA      +SA  K + +R  G  V     +F S + +   +
Sbjct:  120 RTMVVGPNCAGIISPGKSMLGIMPGHI--------YLPGKVGVISRSGTLGYEAAAQMKELGIGISTSVGIGGDPINGSSFLDHLALFEQDPETEAVLMIGEIGGPQEAEASAWIKE-NFSKPVIGFVAGLTAPKGR---RMGHAGAIISATGDSAAEKAEIMRSYGLTVAPDPGSFGSTVADVLAR 294          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.236e-16
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 515
            ++GP   G I  G  K+G   G I        ++ G +G VS+SG ++ E    + +   G    + IGGD   G T  D I  FN  P+ + ++++GE+GG +E    E +++ +V+KPV A+++G  A   K   + GHAGA   G   +A+AK +AL  AGA V
Sbjct:  121 LVGPNCPGVITPGEAKVGIMPGHI--------FKRGKIGIVSRSGTLTYEAAYQLTKYGLGQSTAVGIGGDPVHGLTHRDVIEMFNKDPETEAILMIGEIGGTEEEEAAEYIEK-EVDKPVFAYIAGITAPPGK---RMGHAGAIIMGGKGTAKAKMEALEKAGAYV 275          
BLAST of EY756039 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 7.236e-16
Identity = 64/187 (34.22%), Postives = 93/187 (49.73%), Query Frame = 3
Query:   15 VIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQ---GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEK 566
            +IGP   G I  G  KIG   G I        ++ G +G VS+SG ++ E  +   +V  G    I IGGD F G+   D +  F N P  + ++++GE+GG  E +    LK+   G   KPVV++++G  A   +   + GHAGA   G    A+ K  AL+ AG VV  S     + I + FEK
Sbjct:  167 LIGPNCPGVINPGECKIGIMPGHI--------HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGITAPPGR---RMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342          
The following BLAST results are available for this feature:
BLAST of EY756039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCD_PSEAE1.904e-1635.52Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICPR4.242e-1632.35Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOLI4.242e-1635.16Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL64.242e-1635.16Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO574.242e-1635.16Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_HUMAN4.242e-1634.22Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DICDI4.242e-1634.12Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
MTKB_METEA4.242e-1629.95Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCD_AQUAE7.236e-1634.13Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_MOUSE7.236e-1634.22Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-H07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756039 ID=EY756039; Name=EY756039; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGGTTGTTATTGGCCCAGCAACTGTTGGAGGAATTCAAGCT
GGAGCTTTTAAGATAGGTGACACAGCCGGAACCATTGATAACATCATTCA
TTGCAAACTCTACAGGCCTGGATCTGTTGGTTTTGTCTCCAAATCTGGTG
GCATGTCTAATGAACTATACAACACTATTGCTCGTGTAACAGATGGAATC
TATGAAGGTATTGCAATTGGAGGAGATGTGTTCCCTGGCTCCACTCTTTC
TGATCACATTTTGCGGTTTAACAACATCCCACAGGTTAAAATGATGGTTG
TTCTTGGTGAACTTGGAGGACGGGATGAGTACTCCCTTGTTGAAGCTCTG
AAACAGGGAAAGGTAAACAAACCTGTGGTTGCATGGGTCAGTGGAACCTG
TGCTCGACTATTCAAATCAGAAGTGCAATTTGGTCATGCTGGTGCTAAAA
GTGGTGGTGAGATGGAGTCTGCTCAGGCAAAGAATCAAGCACTAAGGGAT
GCTGGAGCTGTTGTTCCTACTTCATATGAAGCCTTTGAATCTGCAATTAA
GGAGACATTTGAGAAACTTGTTGAAGAGGGGAAGATTCCACCAGTGAAGG
AAGTTACACCACCACAAATCCCTGAGGATCTTAACACTGCCATTAAGAGT
GGGAAAGTACGGGCTCCAACTCATATTATTTCAACCATCTCTGATGACAG
AGGTGAGGAGCCATGCTATGCTGGTGTACCATGTCTTCATTGTAGAACAG
GTTATGGTGTGGGTGATGTTATTTCCCTTTGTGGTTTAACGCAGCCTTCC
CGCTACTGTACCCCATTATTGAGAATGCATATGTTATGCGCTGATCATGC
CCCTGGGTTCTGGGGCT
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