EY756028

Overview
NameEY756028
Unique NameEY756028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13562 contig Csv1_Contig13562:17..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.434e-17
Identity = 68/223 (30.49%), Postives = 97/223 (43.50%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNLER 778
            RY+V ++RRREG T+YR R RLI   K        R VVR TNK I AQ++ A   GD+ +       L ++G      N +AAY  GL+            A Y+  +    E              A+LD+GL +   G+RVF            IPH E+      + S +             HVA Y   L E+ PE Y++ F    QRG++ ++L +
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLV------------AGYKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEVLPEDDRVSGK-------------HVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPK 182          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.434e-17
Identity = 69/214 (32.24%), Postives = 97/214 (45.33%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCE 739
            A+  RY++ ++RRREGKTDYRAR +++        T K R VVR T   + AQII+  + GD  L SA++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH E        D  ++  E         H+  Y  +L E+E  K  S + E
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE----SVLPDESRIRGE---------HIMEYAESLDEEELRKRFSKYLE 169          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.872e-17
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  614 SKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNLERVYXK-YMLPSVQTLPERI*EEASAEHRRY 862
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF    +  +  DN+E +Y K +        P++  ++    H+RY
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRY 85          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.171e-17
Identity = 63/163 (38.65%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 598
            RY V ++RRREG+T+Y AR RL+   K        R VVR TN+ I  QII+A + GD    +A + EL ++G E  L N  AAY TG+LLA R LK     A  EG                     A+LD+GL + T G RVF            IPH+E+
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.115e-17
Identity = 68/221 (30.77%), Postives = 95/221 (42.99%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQI+ A   GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF            IPH E+      +             I   H+A Y   L E+ P+ Y++ F    QRG+E + L
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDER-------------IRGEHIAEYAAKLKEENPDAYKARFSRYLQRGLEPERL 180          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.070e-16
Identity = 64/220 (29.09%), Postives = 98/220 (44.55%), Query Frame = 2
Query:  113 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            Y+VK++RRRE KTDYR R++L+   K        R V R T     AQI+     GD  + SA++ EL + G +    N  +AY TG LL ++ L         +G+ E                  A+LD+GL + T GN +F            IPH E+         +++  E         H+ AY   L E + E+Y+  F +  ++G+E + L
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEE----ILPSEERIRGE---------HIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKL 180          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 67/225 (29.78%), Postives = 101/225 (44.89%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            A+  +Y+V ++RRREGKT++R R++L+        TP  R V R +  +I AQI+     GD ++ SA++ E+ + G +    N  AAY TGLLL ++ LK        EG+ E                  A+LD+GL   T G  V             IPHSE+   G  +             I   HV  Y   L  ++ EKY   F +  + G+  ++L
Sbjct:    2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGLNPEDL 180          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.612e-16
Identity = 63/221 (28.51%), Postives = 94/221 (42.53%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQ++ A   GD+ +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH E+      + S +             H+A Y   L ++ PE Y++ F    QRG+  + L
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDRISGK-------------HIAEYAEKLKKENPELYKTRFSRYLQRGLAPEEL 180          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 65/221 (29.41%), Postives = 102/221 (46.15%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++TAQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL  + +K                ED             A+LD GL + T G  +F            IPH +K  A    D ++L+           HV  Y  +L ED  + Y+  F +  ++G+  ++L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 65/221 (29.41%), Postives = 103/221 (46.61%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++TAQ++S    GD+VL SA+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    + ++L+           HV  Y  +L ED  + Y+  F +  ++G+  ++L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----EEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
The following BLAST results are available for this feature:
BLAST of EY756028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL18_THENV1.434e-1730.4950S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_METTH1.434e-1732.2450S ribosomal protein L18P OS=Methanobacterium the... [more]
RL5_SOLME1.872e-1754.7660S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL18_METHJ4.171e-1738.6550S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_PYRAR7.115e-1730.7750S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_METJA2.070e-1629.0950S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_META32.704e-1629.7850S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_PYRIL4.612e-1628.5150S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_METMP2.289e-1529.4150S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM52.289e-1529.4150S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756028 ID=EY756028; Name=EY756028; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTTCTA
CACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAAGCT
TACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGAC
TGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGTACA
ACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATCACT
GCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATCTGC
TTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATT
ATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAA
ATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGGAGA
GGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGC
TTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCT
CTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGAG
ATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTCACC
GTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGANGACTTTGATG
GAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAAATACATCAGAG
AGGTATTGAGGCTGATAACCTTGAAAGAGTGTACNAGAAGTACATGCTGC
CATCCGTGCAGACCCTACCAGAAAGAATCTGAGAAGAAGCCTCAGCAGAG
CACAGAAGGTACACCTGAAGAACTGACGTACGAGGAAAGAAAGCAGGGTT
AGTGAAAGGTGA
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