EY756028

Overview
NameEY756028
Unique NameEY756028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.938e-14
Identity = 66/221 (29.86%), Postives = 102/221 (46.15%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L EDE E Y+  F +  ++G+  ++L
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDL 181          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.531e-14
Identity = 57/161 (35.40%), Postives = 75/161 (46.58%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHS 592
            RY+VK++RRREGKTDY  R+ L+   K        R VVR TN+ I  Q I     GD V+A A++ EL +YG   G  N  AAY TG L A R        A+  G  E                  A+LD+G   +T G+R++            +PHS
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMR--------AKKAGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHS 133          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.531e-14
Identity = 67/222 (30.18%), Postives = 95/222 (42.79%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKY---IYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEAD 766
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+++    GD  LASA++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH++   A + +      AE   +    +Y G   A       D PE    HF E+ +  ++ D
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDA------ADLPE----HFDELRETLLDGD 184          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 65/221 (29.41%), Postives = 99/221 (44.80%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADN 769
            RY+V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q+I  +  GD V+A+A++ EL  +YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P  +        D  ++  E         H+A+Y  +L  + PE+YQ  F ++ +RG++ ++
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD-----VVPDESRIRGE---------HIASYAESLKNENPEEYQRRFAKLLERGLKPED 179          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.638e-14
Identity = 64/239 (26.78%), Postives = 99/239 (41.42%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNLERVYXKYMLPSVQT 814
            A+   Y+VKY+RRREGKT+Y  R   +    +       R VVR TNK +  Q +     GDI +A+A++ EL ++G +    N  A Y TG L   R  K         G   A+                   D+GL   T G R+F            +P                D  V+   +   H+A Y   L +++P+KY+  F     RG++  +L   + K +L S+++
Sbjct:    2 AHGPNYKVKYRRRREGKTNYYRRYTYVLNRSD-------RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKKA--------GMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLP-AHFKEVLNSIKS 192          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.638e-14
Identity = 65/222 (29.28%), Postives = 96/222 (43.24%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            RY+V ++RRREGKT+Y  R  LI  D         R V R T     AQI+  +  GD+ LASA++ EL  ++G +    N  AAY TG L   R L+                          R   RA++D+GL +   G+RVF            IPH E+      +             I   H+A     + E++PE+Y+  F +  +RG++ + L
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALE--------------------------RGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEEL 184          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.256e-13
Identity = 64/221 (28.96%), Postives = 96/221 (43.44%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            RY+V  KRRREGKT+Y  R +LI   K        R VVR  ++    QI  A+  GD+V+ASA+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF            IP  +    G   +  ++  E         H+A Y   L E  PE ++  F      G++ ++L
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD----GVLPEDDRVRGE---------HIANYAKMLKESNPELFKLRFSGYLSAGLDPESL 180          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.256e-13
Identity = 66/226 (29.20%), Postives = 96/226 (42.48%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            A+   Y+VKY+RRREGKT+Y  R   +  +         R VVR TNK I AQI   +  GD+++ +A++ EL  ++G +  L N  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F            IP                D  +    I   H+A+Y   L  + PE ++  F +  +RG+   +L
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVG--------------DLGIKEDRIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDL 180          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.256e-13
Identity = 64/225 (28.44%), Postives = 97/225 (43.11%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            A+  RY+V ++RRREGKT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK         G+ E                  A+LD+G  K+T GN ++            IPHSE       +             I   H+A Y   L E+E E Y+  F    + G++ + L
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------RGYKE------------------AVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQL 179          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.640e-13
Identity = 54/162 (33.33%), Postives = 73/162 (45.06%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 595
            RY V ++RR EGKTDY  R+ L++       TP  R VVR TN+ I  Q++   + GD  L +AY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ E
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
The following BLAST results are available for this feature:
BLAST of EY756028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL18_METVA1.938e-1429.8650S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_KORCO2.531e-1435.4050S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_HALMA2.531e-1430.1850S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_IGNH44.317e-1429.4150S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_METS55.638e-1426.7850S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_METKA5.638e-1429.2850S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_THEPD1.256e-1328.9650S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_SULTO1.256e-1329.2050S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_NANEQ1.256e-1328.4450S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_METMJ1.640e-1333.3350S ribosomal protein L18P OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756028 ID=EY756028; Name=EY756028; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTTCTA
CACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAAGCT
TACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGAC
TGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGTACA
ACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATCACT
GCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATCTGC
TTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATT
ATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAA
ATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGGAGA
GGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGC
TTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCT
CTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGAG
ATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTCACC
GTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGANGACTTTGATG
GAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAAATACATCAGAG
AGGTATTGAGGCTGATAACCTTGAAAGAGTGTACNAGAAGTACATGCTGC
CATCCGTGCAGACCCTACCAGAAAGAATCTGAGAAGAAGCCTCAGCAGAG
CACAGAAGGTACACCTGAAGAACTGACGTACGAGGAAAGAAAGCAGGGTT
AGTGAAAGGTGA
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