EY756028

Overview
NameEY756028
Unique NameEY756028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.640e-13
Identity = 55/145 (37.93%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVF 544
            RY V+++RRREG+TDY  R RLI   +N       R VVR TN+ I  Q+I+A + GD  L    + EL  +G +  L N  AAY TG+L A R  K     A YEG                      + D+GL   +TG RVF
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQK-----AGYEG---------------------GIADIGLQVASTGARVF 117          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.142e-13
Identity = 56/163 (34.36%), Postives = 77/163 (47.24%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 598
            RY V ++RRREGKTDY  R +LI  ++        R VVR TN+ I  Q+I A + GD  L +A + EL  YG +   +N  AAY TG+L A                V+A   D+            A+LD+GL + T G +VF            +PH E+
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.142e-13
Identity = 63/208 (30.29%), Postives = 87/208 (41.83%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHF 733
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N+ + AQ+I+    GD    +A +  L  YG E    N  +AY TG L   R ++               G D             A+LD+GL   T GN+VF            IPH+E   A +S++  +             H+AAY      DEP  Y S F
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRNRGE-------------HIAAYAE--QRDEP-LYNSDF 164          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.654e-13
Identity = 61/220 (27.73%), Postives = 89/220 (40.45%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMED------EPEKYQSHFCEIHQR 751
            RY V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ++     GD  +ASA + +L  +G E    N  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF            +PH+E  FA + +                 H+A Y   L +       +  +   HF E+ +R
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQRTRG-------------AHIAEYAEQLEDGLYSGDFDATELPDHFDEVRER 179          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.773e-13
Identity = 71/238 (29.83%), Postives = 98/238 (41.18%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMED----------------EPEKYQSHFCEIHQRGIE 760
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR T     AQI+  +  GD  + SA+  EL R +G +    N  +AY  GLL+     K LE   E                        A+LD+GL   T G+ +F            +PHSE+ + G        +  ++ K     H+A Y   L ED                EPEK   HF E+  R IE
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIG---YKALEKGIE-----------------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG--------EERINGK-----HIAEYAKMLKEDDENYKKQFGGYLVKGLEPEKLPEHFEEVKARIIE 193          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.773e-13
Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 604
            RY+V ++RRREG+TDY  R+RL+   ++       R VVR + + +  Q+++    GD+ L+SA + EL +YG E    N  AAY TGLL   + L                 E Y             +LD+G+  ++ G+RV+            +PH+   F
Sbjct:    6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTL----------------AEGYE----------SGVLDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVF 137          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2
Query:   80 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 214
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTP +
Sbjct:    4 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 63/221 (28.51%), Postives = 87/221 (39.37%), Query Frame = 2
Query:  113 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            Y+VK +RRREGKT+Y  R   +   +        RF+VR TNK +  QI      GDI++ASA++ EL + +G +    N  AAY TG L   R +K                          R     + D+GL   + GNRVF            IP                D  +    I   H+A Y   L  +  + Y   F    QRG+  +NL
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPENL 183          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 69/233 (29.61%), Postives = 103/233 (44.21%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE-----------KRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIE 760
            A+  RY+V ++RRREGKT+Y  R++L+        + K R VVR T     AQI+     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL   T G+ +F            +PHSE           +  A ++K  K+ D  ++RK  + G++   +      EPEK   HF E+  + IE
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSEEIYPEDYRINGEHIANYAKALKEEDEALYRKQ-FSGYLVKGL------EPEKLPEHFEEVKAKIIE 194          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12
Identity = 64/226 (28.32%), Postives = 96/226 (42.48%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR +     AQI+     GD  + SA+  EL R +G +    N  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF            +PHSE+ +     +  ++  E         H+A Y   L E++  KY+  F     +G+E + L
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIY----PEDYRITGE---------HIANYAKALKEEDEGKYRKQFSSYLVKGLEPEKL 181          
The following BLAST results are available for this feature:
BLAST of EY756028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL18_METLZ1.640e-1337.9350S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_METPE2.142e-1334.3650S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_HALWD2.142e-1330.2950S ribosomal protein L18P OS=Haloquadratum walsby... [more]
RL18_NATPD3.654e-1327.7350S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_THESM4.773e-1329.8350S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_METBU4.773e-1329.7050S ribosomal protein L18P OS=Methanococcoides bur... [more]
RL5_RABIT8.141e-1375.5660S ribosomal protein L5 (Fragments) OS=Oryctolagu... [more]
RL18_SULSO8.141e-1328.5150S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL18_PYRKO8.141e-1329.6150S ribosomal protein L18P OS=Pyrococcus kodakarae... [more]
RL18_THEON1.814e-1228.3250S ribosomal protein L18P OS=Thermococcus onnurin... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756028 ID=EY756028; Name=EY756028; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTTCTA
CACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAAGCT
TACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGAC
TGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGTACA
ACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATCACT
GCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATCTGC
TTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATT
ATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAA
ATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGGAGA
GGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGC
TTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCT
CTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGAG
ATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTCACC
GTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGANGACTTTGATG
GAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAAATACATCAGAG
AGGTATTGAGGCTGATAACCTTGAAAGAGTGTACNAGAAGTACATGCTGC
CATCCGTGCAGACCCTACCAGAAAGAATCTGAGAAGAAGCCTCAGCAGAG
CACAGAAGGTACACCTGAAGAACTGACGTACGAGGAAAGAAAGCAGGGTT
AGTGAAAGGTGA
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