EY756028
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12 Identity = 70/240 (29.17%), Postives = 100/240 (41.67%), Query Frame = 2 Query: 110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIP------HSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMED---------------EPEKYQSHFCEIHQRGIEA 763 RY+V +RRREGKT+Y R R+I RF+VR T I Q+ +A GD+++A+A+++EL R+G + G N +AAY TGLL A L+ LE EY A+ D+GL + G VF +P SE+R G H+A+Y L E+ +PE SHF E+ + +EA Sbjct: 6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAA---LRALEKGVEY-----------------------AVPDIGLHRPVKGALVFAAIKAANDAGLKVPMGGEVAPSEERIRG-------------------EHIASYAKILRENGLLEKRFSRYLANGLQPEDLPSHFEEVKNKILEA 193
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12 Identity = 59/201 (29.35%), Postives = 84/201 (41.79%), Query Frame = 2 Query: 110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEP 712 RY+V +RRRE +TDY R+RL+ K R V R +N + AQ+++ GD A+A + EL YG + N +AY TG L R +DA + A+LD+GL T GN+ F IPH++ A +S+ + H+AAY L DEP Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARA-----VDAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTRGE-------------HIAAYAEQL--DEP 158
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.094e-12 Identity = 66/226 (29.20%), Postives = 97/226 (42.92%), Query Frame = 2 Query: 98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772 A+ RY+V ++RRREGKT+YR R++L+ K R VVR + AQII GD L SA+ EL R +G + N +AY GLL+ + A+ G E A+LD+GL G+ VF +PHS + F D ++ E H+A Y L E + EK++ F +G++ + L Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF----PDEYRIRGE---------HIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKL 181
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.094e-12 Identity = 56/186 (30.11%), Postives = 89/186 (47.85%), Query Frame = 2 Query: 110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF-----------AGFSKDSKQL 634 RY+V ++RRREG+T+Y R++L+ ++ R VVR +++++ Q+I+ + GDI +SA ++EL +YG N AAY TGLL LK L+ YEG +LD+GL ++ G+RV+ IP S + F AG+ ++S L Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDERIRGEHIAGYREESSDL 158
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.176e-11 Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 2 Query: 110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 604 RY+V ++RRREG+T+Y R++L+ ++ R VVR + +++ Q+I+ + GDI +SA + EL +YG N AAY TGLL + LK YEG +LD+GL ++ G+RV+ +P S + F Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVF 137
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11 Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 2 Query: 110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 604 RY+V ++RRREGKTDY R++LI + K R VVR T+ + AQI+ GD VLA+A + EL + +G + N +AAY TGLL+ + E VE A+LD+GL + G+RV+ +P SE F Sbjct: 6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 2.005e-11 Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 2 Query: 110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 604 RY+V ++RRREG+T+Y R++L+ ++ R VVR + +++ Q+++ + GDI +SA + EL +YG N AAY TGLL LK L+ YEG +LD+GL ++ G+RV+ IP S F Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVF 137
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.467e-11 Identity = 60/231 (25.97%), Postives = 95/231 (41.13%), Query Frame = 2 Query: 113 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDE--------------PEKYQSHFCEIHQRGIEA 763 Y+V++KRRREGKT+Y R +L++ DK R VVR T+ Q++ GD L SA + L +G N +AAY TG L ++ L EG+ E +LD+G+ + G +++ IPH++ + +DS+ I H+A Y ++ +DE PE+ HF + + EA Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKALN--------EGYDE------------------TILDIGVQPSIKGTKIYAVLKGALDAGLYIPHND---SILPEDSR----------IRGEHIAQYAESMDDDEKNAKFANYIRCGLSPEEIPDHFESVKNKIDEA 191 The following BLAST results are available for this feature:
BLAST of EY756028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >EY756028 ID=EY756028; Name=EY756028; organism=Citrus sinensis; type=EST; length=912bpback to top |