EY756028

Overview
NameEY756028
Unique NameEY756028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12
Identity = 70/240 (29.17%), Postives = 100/240 (41.67%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIP------HSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMED---------------EPEKYQSHFCEIHQRGIEA 763
            RY+V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD+++A+A+++EL  R+G + G  N +AAY TGLL A   L+ LE   EY                       A+ D+GL +   G  VF            +P       SE+R  G                    H+A+Y   L E+               +PE   SHF E+  + +EA
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAA---LRALEKGVEY-----------------------AVPDIGLHRPVKGALVFAAIKAANDAGLKVPMGGEVAPSEERIRG-------------------EHIASYAKILRENGLLEKRFSRYLANGLQPEDLPSHFEEVKNKILEA 193          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12
Identity = 59/201 (29.35%), Postives = 84/201 (41.79%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEP 712
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+++    GD   A+A + EL  YG +    N  +AY TG L   R      +DA  +                      A+LD+GL   T GN+ F            IPH++   A +S+   +             H+AAY   L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARA-----VDAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTRGE-------------HIAAYAEQL--DEP 158          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.094e-12
Identity = 66/226 (29.20%), Postives = 97/226 (42.92%), Query Frame = 2
Query:   98 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDEPEKYQSHFCEIHQRGIEADNL 772
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL     G+ VF            +PHS + F     D  ++  E         H+A Y   L E + EK++  F     +G++ + L
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF----PDEYRIRGE---------HIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKL 181          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.094e-12
Identity = 56/186 (30.11%), Postives = 89/186 (47.85%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF-----------AGFSKDSKQL 634
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR +++++  Q+I+ +  GDI  +SA ++EL +YG      N  AAY TGLL     LK L+    YEG                      +LD+GL  ++ G+RV+            IP S + F           AG+ ++S  L
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDERIRGEHIAGYREESSDL 158          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.176e-11
Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 604
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+I+ +  GDI  +SA + EL +YG      N  AAY TGLL   + LK       YEG                      +LD+GL  ++ G+RV+            +P S + F
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVF 137          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 604
            RY+V ++RRREGKTDY  R++LI        + K R VVR T+  + AQI+     GD VLA+A + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+            +P SE  F
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.005e-11
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  110 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 604
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+++ +  GDI  +SA + EL +YG      N  AAY TGLL     LK L+    YEG                      +LD+GL  ++ G+RV+            IP S   F
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVF 137          
BLAST of EY756028 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.467e-11
Identity = 60/231 (25.97%), Postives = 95/231 (41.13%), Query Frame = 2
Query:  113 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMXTLMEDE--------------PEKYQSHFCEIHQRGIEA 763
            Y+V++KRRREGKT+Y  R +L++ DK        R VVR T+     Q++     GD  L SA +  L  +G      N +AAY TG L  ++ L         EG+ E                   +LD+G+  +  G +++            IPH++   +   +DS+          I   H+A Y  ++ +DE              PE+   HF  +  +  EA
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKALN--------EGYDE------------------TILDIGVQPSIKGTKIYAVLKGALDAGLYIPHND---SILPEDSR----------IRGEHIAQYAESMDDDEKNAKFANYIRCGLSPEEIPDHFESVKNKIDEA 191          
The following BLAST results are available for this feature:
BLAST of EY756028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL18_DESK11.814e-1229.1750S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_HALLT2.369e-1229.3550S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_PYRFU3.094e-1229.2050S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]
RL18_METAC3.094e-1230.1150S ribosomal protein L18P OS=Methanosarcina aceti... [more]
RL18_METBF1.176e-1130.3050S ribosomal protein L18P OS=Methanosarcina barke... [more]
RL18_UNCMA1.535e-1133.7350S ribosomal protein L18P OS=Uncultured methanoge... [more]
RL18_METMA2.005e-1130.9150S ribosomal protein L18P OS=Methanosarcina mazei... [more]
RL18_METST4.467e-1125.9750S ribosomal protein L18P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756028 ID=EY756028; Name=EY756028; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTTCTA
CACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAAGCT
TACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGAC
TGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGTACA
ACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATCACT
GCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATCTGC
TTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATT
ATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAA
ATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGGAGA
GGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGC
TTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCT
CTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGAG
ATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTCACC
GTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGANGACTTTGATG
GAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAAATACATCAGAG
AGGTATTGAGGCTGATAACCTTGAAAGAGTGTACNAGAAGTACATGCTGC
CATCCGTGCAGACCCTACCAGAAAGAATCTGAGAAGAAGCCTCAGCAGAG
CACAGAAGGTACACCTGAAGAACTGACGTACGAGGAAAGAAAGCAGGGTT
AGTGAAAGGTGA
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