EY756026

Overview
NameEY756026
Unique NameEY756026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 179.874 bits (455), Expect = 1.031e-44
Identity = 81/119 (68.07%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  137 PHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.031e-44
Identity = 82/126 (65.08%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    1 FVDPASDPILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            FV     P L T+D RTIRYPDPLIK NDT++++LE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  130 FVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.759e-44
Identity = 79/119 (66.39%), Postives = 100/119 (84.03%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L T+D RTIRYPDPLIK NDTI++DL+  KITDFIKF+ GN+ MVTGG N GR+G+I NREKH GSF+ +H++D++G+ FATRL N+F IGKG+KPWVSLP+GKG++L+I EE  KR
Sbjct:  137 PHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.945e-43
Identity = 80/119 (67.23%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:  137 PFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.541e-43
Identity = 77/119 (64.71%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L T+D RTIRYPDP+IKANDT+++DLE  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:  137 PHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.669e-42
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  137 PFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.791e-42
Identity = 80/123 (65.04%), Postives = 97/123 (78.86%), Query Frame = 1
Query:   10 PASDPILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P   P L T+DGRTIRYPDP+IK NDTI+L++  +KI D IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  133 PKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.258e-42
Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    4 VDPASDPILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            V P   P L T+D RTIRYPDPLIK NDT+K+DL   KI D+IKFD GN+ MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL  +F IGK +KP++SLP+GKGIKLS+ EE  +R
Sbjct:  131 VGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.258e-42
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  137 PFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.258e-42
Identity = 84/119 (70.59%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  137 PFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
The following BLAST results are available for this feature:
BLAST of EY756026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RS4_XENLA1.031e-4468.0740S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4Y1_MONDO1.031e-4465.0840S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_DANRE1.759e-4466.3940S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4_DROME1.945e-4367.2340S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_ICTPU2.541e-4364.7140S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4B_SCHPO3.669e-4270.5940S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4_CARGR4.791e-4265.0440S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_IXOSC6.258e-4261.6040S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4C_SCHPO6.258e-4270.5940S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO6.258e-4270.5940S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756026 ID=EY756026; Name=EY756026; organism=Citrus sinensis; type=EST; length=657bp
TTCGTCGACCCCGCGTCCGATCCCATACTTCCCACCTATGATGGGCGTAC
CATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTG
ACTTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAAT
ATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAA
GAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATG
CCCTTGGTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATCGGG
AAGGGTTCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTT
GTCCATCATTGAGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTT
AAGCTTTTACAATGAATTTGGATGCATTTTGCTGCTTTGTTTTTTCTTGT
TGAATTAGAGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAA
AAATGAATCTTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCT
GCTTTGTCCTTTTTTATTTTAGCTACTATTTGGTGGATGTTATTTTCAAC
TATTTAATCTAAGTTCATGTATCTCTTTATCAAAAAAAAAAAAAAAAAAA
AAAAAAA
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