EY756023

Overview
NameEY756023
Unique NameEY756023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.896e-14
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   58 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 240          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 67/206 (32.52%), Postives = 98/206 (47.57%), Query Frame = 2
Query:   11 GSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYF---LGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGSLG 583
            GSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D          WA P S   + F    G + Y GG                   D   ++  KL E+K+ RLAMLA+L ++ +    +     P+G+LG
Sbjct:   78 GSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGK----TPLGALG 260          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 69/208 (33.17%), Postives = 99/208 (47.60%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D  +  + K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   71 YLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VTDPIYPGGSFDP----------LGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   70 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 69/208 (33.17%), Postives = 102/208 (49.04%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P         +++  ++ LMG  E  R       G +G    +    Y GGS DP              +D +   + K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   67 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG----GPLGE---IVDPLYPGGSFDPL----------GLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 249          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 69/208 (33.17%), Postives = 102/208 (49.04%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   68 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.234e-14
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   70 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.234e-14
Identity = 69/208 (33.17%), Postives = 99/208 (47.60%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R       G +G    +    Y GG+ DP               D  +  D K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   81 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGE---VTDPIYPGGNFDPL----------GLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 263          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.234e-14
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GG+ DP               D ++  D K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   68 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG----GPLGE---VVDPLYPGGTFDPL----------GLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.234e-14
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   71 YLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPV 253          
The following BLAST results are available for this feature:
BLAST of EY756023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_CUCSA1.896e-1433.17Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4_SPIOL2.477e-1432.52Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB2_PHYPA2.477e-1433.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2G_SOLLC2.477e-1433.17Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_APIGR2.477e-1433.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC2.477e-1433.17Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2A_SPIOL3.234e-1433.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY3.234e-1433.17Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE3.234e-1433.17Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA3.234e-1433.17Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756023 ID=EY756023; Name=EY756023; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTC
TCTCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCC
TACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGC
CATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTG
CCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAAC
TACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGG
ATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGG
GCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGAT
CCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGA
TGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGAT
TGGCAATGTTGGCAATCTTGGGTTACTTTGNTCAAGTCTTGTTACAGGAG
TTGGCCTTACCAGAACCTATTGGATCACTTGGTGATCCTGTAACAACAAT
GTTTGACTACCTCAAGTTTCACTGAGAGAAAAATTCTTGTTCATGCTTGG
AATTATATATTCAAGCCTTGTCATCCCCACTCTGNTCTATCTACTTTCCC
ATTGGAAAATTTCTATGTGAAAAAGGATGGAACTTGCCGGATTGACTTGT
TATGGCTAACCGGACCCCTTAATATTAATTTTGGACCGGTAATTACCTCG
CGNNNNCCCCCAAAATCNCATACAGCCCAAAATAAATACAATACGATACT
AAACCCCTNCCAAAAAAATAAAAAATACCTTAATTATGGGGGGCCCCC
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