EY756023

Overview
NameEY756023
Unique NameEY756023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.576e-13
Identity = 69/211 (32.70%), Postives = 100/211 (47.39%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY--LGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQ-ELALPEPIGSLGDPV 592
            + +G  PGDYG+D  GLS DPE    F   + L   EVI+GR+AMLGA+G + PE+L K  G+  +E    WF+ G  I   G  +Y  +P  +           ++ LMG  E  R       G  G   + G + +  LG + DP                  +  + K+KE+KNGRLAM ++ G+F Q ++  +  L      L DPV
Sbjct:   69 YLNGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGE-GNDLYPGGQYFDPLGLADDPV-----------------TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 58/185 (31.35%), Postives = 82/185 (44.32%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQ 535
            +  GS PGD+GFD LGL + P     + E       E+I+ R+AML   G I PE LG    +  +   A        P G   Y   P       T+  +E   + F EH+R  +  +            +KY GG+ DP              KD    ++ K+KE+KNGRLA+LAI+G+  Q
Sbjct:   58 YLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAI-------PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 67/208 (32.21%), Postives = 100/208 (48.08%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+F   ++      E +   L DPV
Sbjct:   31 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDP----------LGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPV 213          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 63/192 (32.81%), Postives = 90/192 (46.88%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLL 544
            + +G  PGDYG+D  GLS DPE    + E       E+I+ R+AMLGA+G   PE+L K+G    E    WF+ G  I   G  +Y  +P  +          +++ LMG  E  R     N G  G     G +  Y G S DP               D  +  + K+KE+KNGRLA  ++ G+F Q ++
Sbjct:   56 YLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIV 221          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 64/207 (30.92%), Postives = 96/207 (46.38%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGS-LGDPV 592
            + +G  PGDYG+D  GLS    T  F + + L   EVI+ R+ MLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + ++KE+KNGRLAM ++ G+F Q ++      E +   L DPV
Sbjct:   69 YLTGEFPGDYGWDTAGLSADPAT--FAKNRKL---EVIHCRWTMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 251          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLL 544
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    W + G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP              +D ++  + K+KE KNGRLAM ++ G+F Q ++
Sbjct:   70 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGVKFGEAV--WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG----GPLG---VVVDPLYPGGSFDPL----------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIV 235          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 68/207 (32.85%), Postives = 95/207 (45.89%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGSLGD 586
            + +G  PGDYG+D  GLS DPE    + E       EVI+ R+A+LGA+G + PE+L   AG+   E    WF+ G  I   G  +Y   P  +          +++ LMG  E  R     N G  G     G +  Y G S DP               D  +  + K+KE+KNGRLAM +  G+F Q ++       PI +L D
Sbjct:   58 YLTGEFPGDYGWDTAGLSADPETFKKYREL------EVIHARWALLGALGILTPELLSTYAGVKFGEPV--WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGGPAGE----GLDPLYPGESFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKG---PIQNLAD 235          
BLAST of EY756023 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 64/208 (30.77%), Postives = 97/208 (46.63%), Query Frame = 2
Query:    2 HASGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFXQVLLQELALPEPIGSLGDPVT 595
            + +G  PGDYG+D  GLS DPE    F + + L   EVI+ R+A+   +G + PE+L + G+   E    WF+ G  I   G  ++  +P          ++  ++ LMG  E             GR   +    YLGGS DP               D +   + K+KE+KNGRLAM ++ G+F Q ++       PI +L D +T
Sbjct:   67 YLTGEFPGDYGWDTEGLSADPET---FAKNREL---EVIHCRWAIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG-------GRLGEVVDPLYLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG---PIENLADHLT 246          
The following BLAST results are available for this feature:
BLAST of EY756023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB23_HORVU3.576e-1332.70Chlorophyll a-b binding protein of LHCII type III,... [more]
CB11_SOLLC4.671e-1331.35Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_PEA7.967e-1332.21Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_CHLRE1.359e-1232.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP1.775e-1230.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_PETSP2.318e-1232.46Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2_CHLMO3.027e-1232.85Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE9.739e-1130.77Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756023 ID=EY756023; Name=EY756023; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTC
TCTCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCC
TACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGC
CATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTG
CCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAAC
TACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGG
ATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGG
GCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGAT
CCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGA
TGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGAT
TGGCAATGTTGGCAATCTTGGGTTACTTTGNTCAAGTCTTGTTACAGGAG
TTGGCCTTACCAGAACCTATTGGATCACTTGGTGATCCTGTAACAACAAT
GTTTGACTACCTCAAGTTTCACTGAGAGAAAAATTCTTGTTCATGCTTGG
AATTATATATTCAAGCCTTGTCATCCCCACTCTGNTCTATCTACTTTCCC
ATTGGAAAATTTCTATGTGAAAAAGGATGGAACTTGCCGGATTGACTTGT
TATGGCTAACCGGACCCCTTAATATTAATTTTGGACCGGTAATTACCTCG
CGNNNNCCCCCAAAATCNCATACAGCCCAAAATAAATACAATACGATACT
AAACCCCTNCCAAAAAAATAAAAAATACCTTAATTATGGGGGGCCCCC
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