EY756019

Overview
NameEY756019
Unique NameEY756019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756019 vs. ExPASy Swiss-Prot
Match: COPB_CHICK (Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.467e-23
Identity = 60/166 (36.14%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   13 SNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLR 510
            +N A+A DV+ FVRE I+    LR  I+ ++L+ F+ I++ ++   ALWI+GEYC +  ++++ +  +++ LGE+P    SE  ++    K              +  V   GTYATQSA S    S PT  +       LR  LL GDFF+ A +A TLTK+ LR
Sbjct:  412 NNEAAAADVLEFVREAIQRFDNLRPLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEVTVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALR 567          

HSP 2 Score: 40.0466 bits (92), Expect = 1.467e-23
Identity = 18/56 (32.14%), Postives = 35/56 (62.50%), Query Frame = 3
Query:  558 QALLIMVSMLQLXQSPVLPHPIDNDSFDRIVVCIRLLCNTG*YIRKIWLQSCRRAL 725
            +A+L+M ++L L +S +   PI +D  DRI +C+++L      +  I+ + CR++L
Sbjct:  584 EAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSL 639          
BLAST of EY756019 vs. ExPASy Swiss-Prot
Match: COPB_YEAST (Coatomer subunit beta OS=Saccharomyces cerevisiae GN=SEC26 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.469e-23
Identity = 53/176 (30.11%), Postives = 93/176 (52.84%), Query Frame = 1
Query:   16 NVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEV 543
            N  +A  +I F++E+IE  P+LR +I+  ++    ++R+A+    ALWI+GEY +  SE+++    I+  +GE+P    SE  + T + +               P +L DGTYAT+SA            +   +   +R  +L+GDF+  A++A T+ KLVL+ E V  ++  +
Sbjct:  414 NSVAASGIIAFIKEVIEKYPQLRANILENMVQTLDKVRSAKAYRGALWIMGEYAEGESEIQHCWKHIRNSVGEVPILQ-SEIKKLTQNQEHTEENEVDATAKPTGPVILPDGTYATESAFDVKTSQKSVTDEERDSRPPIRRFVLSGDFYTAAILANTIIKLVLKFENVSKNKTVI 588          

HSP 2 Score: 34.2686 bits (77), Expect = 5.469e-23
Identity = 15/37 (40.54%), Postives = 27/37 (72.97%), Query Frame = 3
Query:  558 QALLIMVSMLQLXQSPVLPHPIDNDSFDRIVVCIRLL 668
            +ALLI+VS++++ QS ++   ID DS +R++  I +L
Sbjct:  594 EALLILVSIVRVGQSSLVEKKIDEDSLERVMTSISIL 630          
BLAST of EY756019 vs. ExPASy Swiss-Prot
Match: COPB_SCHPO (Coatomer subunit beta OS=Schizosaccharomyces pombe GN=sec26 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.263e-23
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   25 SAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEE-GEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTI-VQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLR 510
            SA  V+ F++E++E  P LR S IT+LL +  ++RA ++    +WI GEYC +  ++     +I+  LGE+P  +  E+  +D  +  +                VL DGTYAT+SA +  A S   +          LR+ +L+GD++L AV+A  LTKLV+R
Sbjct:  408 SASSVLSFIKEVMEKFPDLRSSNITKLLLSLKELRAGKIFRGVIWIAGEYCLTEDDIRVAWKSIRASLGEVPILASEEQLLKDVSNVPEDDLLIDISAPASTSRKVLPDGTYATESAVTSEALSAARLEAVKASKKPPLRTQILSGDYYLAAVLASALTKLVMR 571          

HSP 2 Score: 36.1946 bits (82), Expect = 9.263e-23
Identity = 16/37 (43.24%), Postives = 27/37 (72.97%), Query Frame = 3
Query:  558 QALLIMVSMLQLXQSPVLPHPIDNDSFDRIVVCIRLL 668
            +A LIM S++++ QS  + + ID+DS +RI+ CIR +
Sbjct:  588 EACLIMTSIIRVGQSKFVKYTIDDDSVERIMNCIRAI 624          
The following BLAST results are available for this feature:
BLAST of EY756019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPB_CHICK1.467e-2336.14Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE... [more]
COPB_YEAST5.469e-2330.11Coatomer subunit beta OS=Saccharomyces cerevisiae ... [more]
COPB_SCHPO9.263e-2334.15Coatomer subunit beta OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-F09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756019 ID=EY756019; Name=EY756019; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGCAGCAATGTTGCTTCAGCTATAGATGTGATTATCTTTGT
TCGAGAAATAATTGAAATGAATCCTAAACTGAGGGTCTCTATTATAACAA
GATTATTGGACAACTTCTACCAGATCAGAGCTGCACGAGTGTGCACTTGC
GCTCTTTGGATCATTGGAGAGTATTGCCAGTCTCTTTCTGAAGTTGAGAA
TGGCATAGCAACCATTAAGCAGTGTCTTGGAGAGTTGCCATTTTTCTCAG
TCTCTGAAGAAGGGGAGGATACTGATTCTTCTAAGAAAGTTCAGCAGCAA
GCCAGCTCAACTACTGTTTCTTCCAGGAGACCAGCTGTTCTTGCTGATGG
AACTTATGCTACTCAGAGTGCCGCCTCTGAAACCGCTTTTTCCCCTCCTA
CCATTGTTCAGGGAACATTGACTTCTGGAAATTTAAGATCCCTTCTTCTC
ACTGGTGATTTTTTCCTTGGGGCAGTTGTGGCTTGCACACTGACAAAGCT
TGTTTTGAGATTGGAGGAGGTGCAGCCATCTCGAGTTGAAGTGAAAAAGC
ATCCTCACAGGCCTTACTGATCATGGTCTCAATGTTGCAATTANGACAAT
CTCCAGTTCTGCCACACCCAATTGATAACGATTCTTTTGATAGGATTGTT
GTGTGCATAAGATTGCTTTGCAATACTGGNTGATATATCAGGAAGATATG
GTTGCAGTCTTGCCGCAGAGCTTTGTTGAGATGCTTTCGAGAAANCAGTA
AGGGATCTGAGGAATAAAGGCAAGGCTCAGATTCTCATGCCAGCAGATGA
CCNTATGACTCTACCATCTGAGACAGGAAGGGATGANTCACTGGAATGAA
AAGAGGGCAAATATCTAACCCCACT
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