EY756016

Overview
NameEY756016
Unique NameEY756016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:4..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.434e-26
Identity = 60/190 (31.58%), Postives = 112/190 (58.95%), Query Frame = 2
Query:   53 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 622
            M+ ++  E +EIP+ V V +   II+++GP+G++ ++F        +  DG     ++ ++  F +R+  A   + +SH++N+ITGVTKGYRY ++ +Y HFP +  +      ++I N +GEK  RR ++L+GV V       ++++++G ++E V+++AA I     +   D R F DGI++ +K  I
Sbjct:    1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAK-GIQISLDGN----KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVG--NEVQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26
Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 2
Query:   74 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            E +EIPEGV+V +    ++V+GP+G+L R F    +        E G   +  D  F  RK  A  RT  +H++N+I GVT+G+ YK++ VY+HFPI+  +   +  IE  NFLGEK  R+ ++L GVTV    KV+  E+I++G D E V ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEK 177          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.293e-26
Identity = 73/181 (40.33%), Postives = 106/181 (58.56%), Query Frame = 2
Query:   74 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            E +EIPEGV+V +    ++V+GP+G++ +      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +   +  IE  NFLGEK  RR ++L GVTV    KVK  E+I++G D E   ++AA I Q   +   D R F DGIY+ EK
Sbjct:    9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEK 177          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 67/184 (36.41%), Postives = 107/184 (58.15%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDG-----ETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            +E+P+GV V ++   +  +G +G++SR F+   +   + TDG     ETGK           ++T A + T  SH++N++TGV++GY Y M+ VYAHFPI   +   DK + I NFLGE+K R   ++    V ++ DKV    +L G + E + ++AA I Q C ++ +D R F DGIY++ K
Sbjct:    9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGGKVIVETGK---------DDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSK 176          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.070e-25
Identity = 71/183 (38.80%), Postives = 104/183 (56.83%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            L  E +EIPE V V++N   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIST----EDGK--VVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.070e-25
Identity = 72/183 (39.34%), Postives = 104/183 (56.83%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            L  E +EIPE V V+IN   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIST----EDGK--VVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.023e-25
Identity = 64/178 (35.96%), Postives = 106/178 (59.55%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            ++IP+GV V+I+ + + V+GP+G+LSR   + +++       +    ++ I +    ++  A + T  +H++N+I GVT G+ Y+MR VY+HFPI   +  AD  + I NFLGE+K R   ++  V V   +  KDE+++ G D E V ++ A I Q   V+  D+R F DGIY+ EK
Sbjct:    9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.027e-24
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            L  E +EIPE V V+IN   + V+    +L R   +  ++       E GK  + I+  F  +  +A + T  SH+QN+ITGVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +++++ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIST----EDGK--VVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 68/180 (37.78%), Postives = 102/180 (56.67%), Query Frame = 2
Query:   74 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            E ++IPE V+V+IN   + V+    +L R F+H  +      D       + I   +  RK  A + T  +H+ N+I GVT+G+ YK++  YAHFP+  S+   +  IE  NFLGEK  RR  +++GVTV  S    +++I+ G D E V ++AA I Q   +K +D R F DGIY+ EK
Sbjct:    9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGD------EIVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEK 177          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.099e-24
Identity = 70/183 (38.25%), Postives = 102/183 (55.74%), Query Frame = 2
Query:   65 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 613
            L  E +EIP  V V+IN   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+QN+I GVT G+ YK+   YAHFP+  S      ++ I NFLGEK  R  +++DGVTV  S    +E+I+ G + E V ++AA I Q   VK +D R F DGIY+ EK
Sbjct:    6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIST----EDGK--VVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177          
The following BLAST results are available for this feature:
BLAST of EY756016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_SULSO1.434e-2631.5850S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_PYRFU3.194e-2640.8850S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_PYRHO9.293e-2640.3350S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_UNCMA1.214e-2536.4150S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_METM72.070e-2538.8050S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM52.070e-2539.3450S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METTP6.023e-2535.9650S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_METMP1.027e-2438.2550S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METJA2.989e-2437.7850S ribosomal protein L6P OS=Methanocaldococcus ja... [more]
RL6_METM65.099e-2438.2550S ribosomal protein L6P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-F06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756016 ID=EY756016; Name=EY756016; organism=Citrus sinensis; type=EST; length=821bp
CCACGCGTCCGGGAAGGAGCTGAGACGCAGCAGAGGCAGAGCAGCTTTCA
TCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTG
AAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAA
GCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTG
ATGGGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCT
CGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCT
CATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACG
CTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAG
ATCCGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGA
CGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTG
ATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAG
AAATGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTA
TGTCAGTGAGAAGGGCACAATTGTTGGAGAAGATTAGTTAGCTTTCAAAT
TTATGTCACATTATTATCATGAAATTGGGTATCATCTTGCTCTTTTTGCC
CTGTGTTGGGGAAAGTCTTTTATTTTTTTCGTTTGGAATTTTGGGATTAG
AGAAGTTTAGATTTCTGCTTCACTCCCATGTACTTTGTCCAATATGTATC
AAATGGATTTTTCCCNNNNAN
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