EY756016

Overview
NameEY756016
Unique NameEY756016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:4..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.675e-16
Identity = 53/169 (31.36%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   53 MKTILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALI 544
            M+ + S E +EIP+GV V I        I++V+GP G++++ FK+  +   L  DG     ++ ++ +   ++  A + T    ++N+  GVT+G+RYK++ +Y HFP+   +      + I NFLG K    + +  GV V    K K++++++G D ELVS  AA +
Sbjct:    1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQ-DG-----KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQG--NQLVIENFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14
Identity = 53/176 (30.11%), Postives = 96/176 (54.55%), Query Frame = 2
Query:   80 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 604
            +++P+ V+  +    ++++G  G+ SR F+   +  ++  +G +    +KI     ++ T   + T  S  + LI GVTKG+ Y M+  + HFP+  S+   DK I + NFLGEK  R  +++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI++
Sbjct:   10 IKLPDDVQATMENNELKIKGKLGEASRIFRDNYVKAYI--EGSS----VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSV-RGDKLI-VENFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173          
BLAST of EY756016 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 55/183 (30.05%), Postives = 93/183 (50.82%), Query Frame = 2
Query:   71 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 616
            +  +EIP+ VKV ++  ++ +     KL + F   N    L+ D      ++KI     + +    + T  S + N++ G+ +G++Y+M+  Y+HFP+  S+    K++ I NF GE+  R  E++    V     VK D L L+G   + V  +AA I +   +K  D R F DGIY+  KG
Sbjct:    7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFAD-NYVRLLVEDN-----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISKG 177          
The following BLAST results are available for this feature:
BLAST of EY756016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_PYRAE6.675e-1631.3650S ribosomal protein L6P OS=Pyrobaculum aerophilu... [more]
RL6_PICTO1.644e-1430.1150S ribosomal protein L6P OS=Picrophilus torridus ... [more]
RL6_THEVO6.248e-1430.0550S ribosomal protein L6P OS=Thermoplasma volcaniu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-F06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756016 ID=EY756016; Name=EY756016; organism=Citrus sinensis; type=EST; length=821bp
CCACGCGTCCGGGAAGGAGCTGAGACGCAGCAGAGGCAGAGCAGCTTTCA
TCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTG
AAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAA
GCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTG
ATGGGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCT
CGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCT
CATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACG
CTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAG
ATCCGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGA
CGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTG
ATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAG
AAATGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTA
TGTCAGTGAGAAGGGCACAATTGTTGGAGAAGATTAGTTAGCTTTCAAAT
TTATGTCACATTATTATCATGAAATTGGGTATCATCTTGCTCTTTTTGCC
CTGTGTTGGGGAAAGTCTTTTATTTTTTTCGTTTGGAATTTTGGGATTAG
AGAAGTTTAGATTTCTGCTTCACTCCCATGTACTTTGTCCAATATGTATC
AAATGGATTTTTCCCNNNNAN
back to top