EY755978

Overview
NameEY755978
Unique NameEY755978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10693 contig Csv1_Contig10693:1003..1796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY755978 vs. ExPASy Swiss-Prot
Match: MAN5_ORYSJ (Putative mannan endo-1,4-beta-mannosidase 5 OS=Oryza sativa subsp. japonica GN=MAN5 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = 1 
Query:    4 RVRGIVPATVHSYPDQWLSSSNDRD-QLSFLNNWLDTHIQDAEHILR-KPILLAEFGKSRKDP--GYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            RV G+  A+VH YPD WL +   ++ QL F  +W++ HI DAE  L   P+L AEFG S +     ++   RD     VY  +  S +R       L WQ+  EG D   DGY +VL ++ +TA ++   + +L
Sbjct:  318 RVLGVDFASVHVYPDTWLPAGATKEAQLRFATSWVEAHIADAEGALGGMPVLFAEFGVSTRGARAAFNATSRDAFIEAVYGAMLRSTRRGGGGAGALLWQVFPEGTDYMDDGYAVVLPRAAATAGIVAAHSRRL 451
The following BLAST results are available for this feature:
BLAST of EY755978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
MAN5_ORYSJ7.486e-1735.82Putative mannan endo-1,4-beta-mannosidase 5 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755978 ID=EY755978; Name=EY755978; organism=Citrus sinensis; type=EST; length=795bp
CCACGCGTCCGGGGCATTGTTCCCGCAACAGTTCATTCCTACCCTGATCA
ATGGTTATCAAGCTCAAATGATCGAGATCAACTTTCTTTCTTGAACAACT
GGCTCGACACACACATCCAAGATGCTGAGCACATTCTTCGGAAGCCAATA
CTCCTAGCAGAATTCGGGAAATCGCGGAAAGATCCTGGTTATAGCACCTA
CCAGAGAGATGTAATGTTTAATACCGTGTACTACAAGATTTATTCTTCGG
CTAAAAGAGGAGGTGCAGCAGCTGGAGGCCTGTTTTGGCAACTTCTGACT
GAAGGAATGGACGCTTTTCGAGATGGTTATGAGATAGTTTTGAGCCAAAG
CCCCTCGACTGCAAATGTTATTACTCAACAGGCTCACAAGTTGTACCAAA
TTCGTAAGATTTTCGCAAGAATGAGAAATGTTGAGAGGCGGAAGAGGTCC
AGGGGCATGAGGAGACGTCAGAGGCAGGGTGGAAACAGGGGAAGGCGCAT
AGGAAACTGAAAATATGTATTTGCTTGAACGAAATGAGACCCGGGTTGTA
TCAGCGCGTGTTGCTATCAACTTAAACGGATAGTCAGTCAGGTTTAGGGA
TAGCAACTGGATCGCTCCATAATAGATATCCATAATATTCATTTAATTAG
ATCGGATAATATTCATCTAAAAATTTTTAGATTTTGAAATGGATATTTTA
AAATTATATCCAGATGGATATGGATGGATATGGATAATTATTTTTACCTA
ATGGATATCCCGTTAACCCCAAAAAAAAAAAAAAANNANANNNNN
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