EY755974

Overview
NameEY755974
Unique NameEY755974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY755974_ssr332 microsatellite EY755974_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 481
            LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK
Sbjct:   24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   53 MQIFVKTLTGKTTTLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKTLTGK   L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 2
Query:   59 IFVKTLTGKTTTLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            I VKTLTGK   +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVL++YKVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of EY755974 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  350 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 508
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
The following BLAST results are available for this feature:
BLAST of EY755974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RS27A_DAUCA2.125e-1995.4540S ribosomal protein S27a (Fragment) OS=Daucus ca... [more]
NEDD8_CAEEL3.625e-1959.21NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ARATH8.076e-1960.81NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
RS27A_CHICK1.055e-1871.7040S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN1.378e-1871.7040S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO1.378e-1871.7040S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN1.378e-1871.7040S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]
RS27A_ICTPU3.069e-1871.7040S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RS27A_RAT4.008e-1869.8140S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE4.008e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-B06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755974 ID=EY755974; Name=EY755974; organism=Citrus sinensis; type=EST; length=686bp
TCGACAACCGACGCGTCCGTGAAATTTGTTGCGTCTCTCCTCATCTGCAG
CCATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCACCACCCTAGAG
GTCGAATCATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAA
GGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGC
TCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACA
CTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGAA
GACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGC
TCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAGG
CTGAGGAAGGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGGC
TAACCACTTTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTTT
ACCAGAAGGCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTATT
TTTAATTAGTATTAATTACTATGGTTTTTGTGGTTCAAAATTATGACTCT
TTCGTAATTTTGTTTGACTATATACTTGTTTGCTTGAGCGTTTTAATTAA
ATGGTTATCTGTTTTAAATTTTAAAAAAAAAAAAAA
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