EY755965

Overview
NameEY755965
Unique NameEY755965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5506 contig Csv1_Contig5506:35..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755965 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.931e-13
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  143 GKISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 334
            GK+S+ L  + +LVT+LNP IGY  AA +AK+A++EG  + D AL+   L+    + L+ PEK+
Sbjct:  390 GKLSEALARNPILVTALNPIIGYQKAAEIAKQAYREGRPIIDVALENTDLDRARLEVLLDPEKL 453          

HSP 2 Score: 42.3578 bits (98), Expect = 1.931e-13
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANR 143
            V G +G+FELNV  P++A  LLHS++LL + S       +   + N+
Sbjct:  343 VAGQSGNFELNVMLPLVADNLLHSIQLLANVSRLLADKAIASFKVNQ 389          
BLAST of EY755965 vs. ExPASy Swiss-Prot
Match: FUMC_MYCTU (Fumarate hydratase class II OS=Mycobacterium tuberculosis GN=fumC PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.764e-12
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 3
Query:    6 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 146
            GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E
Sbjct:  350 GGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVE 396          

HSP 2 Score: 40.817 bits (94), Expect = 5.764e-12
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  149 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 292
            + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  398 LRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of EY755965 vs. ExPASy Swiss-Prot
Match: FUMC_MYCBO (Fumarate hydratase class II OS=Mycobacterium bovis GN=fumC PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.764e-12
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 3
Query:    6 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 146
            GG+NG FELNV+ PM+A  +L S +LL + S  F + C+ G+ AN E
Sbjct:  350 GGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVE 396          

HSP 2 Score: 40.817 bits (94), Expect = 5.764e-12
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  149 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 292
            + +L   S  +VT LN  IGY+ AAAVAK+A KE  T++   +  G++
Sbjct:  398 LRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLI 445          
BLAST of EY755965 vs. ExPASy Swiss-Prot
Match: ASPA_BACSU (Aspartate ammonia-lyase OS=Bacillus subtilis GN=ansB PE=3 SV=2)

HSP 1 Score: 46.9802 bits (110), Expect = 7.482e-12
Identity = 21/66 (31.82%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  146 KISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 343
            ++ + + +S  ++T++NP +GY+ AA +A++A   G +++D  L+  VL  EE D ++ P +M  P
Sbjct:  400 RMKQYVEKSAGVITAVNPHLGYEAAARIAREAIMTGQSVRDLCLQHDVLTEEELDIILNPYEMTKP 465          

HSP 2 Score: 44.2838 bits (103), Expect = 7.482e-12
Identity = 18/44 (40.91%), Postives = 29/44 (65.91%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 149
            G  ELNV +P++   LL S+ ++ +   SF  NC++GI+AN +R
Sbjct:  357 GQLELNVMEPVLVFNLLQSISIMNNGFRSFTDNCLKGIEANEKR 400          
BLAST of EY755965 vs. ExPASy Swiss-Prot
Match: FUMC_HALSA (Fumarate hydratase class II OS=Halobacterium salinarium GN=fumC PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.126e-11
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  161 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 334
            +  S+ L T+LNP IGYD A+ VAK A KEG T+ +  ++ G L+  E  +++ PE M
Sbjct:  402 VERSMALATALNPTIGYDKASEVAKAALKEGKTVTEVVVEKGYLSEAEAADVLDPEGM 459          

HSP 2 Score: 39.2762 bits (90), Expect = 2.126e-11
Identity = 17/45 (37.78%), Postives = 29/45 (64.44%), Query Frame = 3
Query:    6 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQAN 140
            G + G  +LN++KP++A   L S  +L +ASA+F +  V  ++AN
Sbjct:  350 GAAEGQIDLNLYKPVLAHNFLQSADMLANASAAFGEKFVAKLEAN 394          
BLAST of EY755965 vs. ExPASy Swiss-Prot
Match: FUMC_THEAQ (Fumarate hydratase class II OS=Thermus aquaticus GN=fumC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 2
Query:   77 EIAGRCICFF*EELCERNSS**GKISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 349
            ++ G  +  F + L +       +I + L+++ ML T+LN  IGYD AA + KKA KE  +LK AAL+LG L  EEFD +VVP ++  P +
Sbjct:  374 KLLGDAVASFDQHLAQGIEPNLERIEEHLNKNPMLATALNKAIGYDKAAEIVKKAIKEKKSLKQAALELGYLTEEEFDRIVVPMRLAKPHE 464          
BLAST of EY755965 vs. ExPASy Swiss-Prot
Match: ASPA_PSEFL (Aspartate ammonia-lyase OS=Pseudomonas fluorescens GN=aspA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 7.829e-11
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  155 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 343
            +L+  S+ LVT+LNP IGY+NA  +A+ A + G  + +   + G+L+    D+++ PE MI P
Sbjct:  409 ELVEHSIGLVTALNPYIGYENATRIARIALESGRGVLELVREEGLLDDAMLDDILRPENMIAP 471          

HSP 2 Score: 38.1206 bits (87), Expect = 7.829e-11
Identity = 18/49 (36.73%), Postives = 27/49 (55.10%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 149
            +    G  +LNV +P+IA  +  S+RLL  A     ++C+ GI AN  R
Sbjct:  358 MAAEGGQLQLNVMEPLIAFKIFDSIRLLQRAMDMLREHCIVGITANEAR 406          
The following BLAST results are available for this feature:
BLAST of EY755965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
FUMC1_PSEAE1.931e-1343.75Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]
FUMC_MYCTU5.764e-1248.94Fumarate hydratase class II OS=Mycobacterium tuber... [more]
FUMC_MYCBO5.764e-1248.94Fumarate hydratase class II OS=Mycobacterium bovis... [more]
ASPA_BACSU7.482e-1231.82Aspartate ammonia-lyase OS=Bacillus subtilis GN=an... [more]
FUMC_HALSA2.126e-1143.10Fumarate hydratase class II OS=Halobacterium salin... [more]
FUMC_THEAQ4.268e-1140.66Fumarate hydratase class II OS=Thermus aquaticus G... [more]
ASPA_PSEFL7.829e-1138.10Aspartate ammonia-lyase OS=Pseudomonas fluorescens... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-A09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755965 ID=EY755965; Name=EY755965; organism=Citrus sinensis; type=EST; length=647bp
CAGTGGGTGGATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATG
ATTGCTAGTGGTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGC
TTCTTTTGAGAAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGAT
TTCCAAATTGCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTA
AAATTGGTTATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAG
GGAACTACACTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGA
AGAATTTGATAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACT
AACCAGCTTATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTAT
CATTTTGCGGGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCA
ACTGAATCACTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAA
AAACAAAGAAAGGGGCAACCAAAAAAAAACTATATTCTTGAGGNTTTCCC
AGGAGGAGGCTTCGGTGATATGTCATTTCACGTGGTGACAGAATAGCGAT
TGGTAGGCCCACAAAGGAAGACCTCCCTCATTTTTTGTGCGACAGTG
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